Papaver somniferum (opium poppy): 113313906
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Entry
113313906 CDS
T05758
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113313906
03015 mRNA surveillance pathway
113313906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113313906
03041 Spliceosome [BR:
psom03041
]
113313906
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113313906
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
113313906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
113313906
NCBI-ProteinID:
XP_026418462
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Position
9:complement(6731403..6741290)
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AA seq
880 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDIRKVKMDVVKPWIATRVTEFL
GFEDEVLINFIYGLLDGKEINGKEVQIQLTGFMEKNTGKFMKELWNLLRSAEQNASGVPQ
QFLDAKEEEIKKKKEEADRITLEIQKKRDIEQEKAKEMDGEVDKTRSQSDGFHSLPKRLP
PVGEEDIASEERNGSRGNNRLSRSPHSAQRGLSPKFGRKLSRSISRSPPRRRSISPDRRY
RSPIKRSISPRRRPSPRRHRSPLRRRSPYSRRRSTSRSWRRSPSPARRRSRSPARRRSRS
PGRRRSPSPARRRSPSPVRRRSPIPVRRRSPSPVRRRSPPPMRRRSPSPRRRRSPSPFQR
RSRRRSPTPRRRSPSPFRRRSPSPLGSISPPRRSPSPISPKVSRRSPMGSPQQRNRSRSP
YRSRSPVYRSRRSLSRDREIQTNGMGSKTNRDDYPSQRIRGRRSPVRHTPEREEVKLSDQ
EHRALDPVSRRPQVSLRSPQREPRKQSGVQRKVPVRVHSPEKSPSGSESPPPNRKVISGD
DKRTFSPSESPLRVTRELRNRAESASPVRQIRDHGARHRGSPETSGDEDASHARRNARLS
PRKRTRLSPAAASKNMHDEEYSPEDSARDQPGDARSRHADNVESRKKDRDFKSEKASVMA
ERPGRNTQNISSHSSDVVDYGHGRVEGEKSKLDVIPDEQTGSKKRSRSSNLEGNEQGDKL
EALQKPTKRVDHQIATSDSDSEENEKYRIGGVDKRKEKESERHQMASGDDASDDSQIDTK
KDAKRRRKEEKRLRKEEKRRRREERHRKKEERRAGRLKSKSKDTVPSDTKKNQKFGDDDV
ALRRESHLSDTEEDIDPKQHEIELRKRALESLRAKKAINP
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcggtttctttagggggacgtcagctgatcaagatactcgattctctaataaa
caagctaaattacttaaatcgcagaaattcgctcccgaattggatcatctggtggacatt
aggaaggtgaagatggatgttgttaaaccatggattgctacacgtgtgacggagtttctt
ggttttgaagatgaagttttgattaactttatatatggacttctagatggaaaggaaatt
aatgggaaggaggtacaaatccagcttactgggtttatggagaaaaatactggcaagttt
atgaaagaactgtggaatttacttcgtagtgctgagcagaatgctagtggtgtacctcaa
cagtttttggatgctaaagaagaggaaattaagaagaaaaaggaagaagcagatcggatt
acacttgagattcaaaagaagagggacattgagcaagagaaggctaaggagatggatggc
gaggttgataaaacgaggtcccagagtgacggtttccattccctcccgaagcgtttgccg
cccgtaggcgaagaagatatagcatctgaagaaaggaacggttcgaggggaaacaacagg
ctctctagatctccacattcagctcaacgtggcctttcacctaaatttggcaggaagcta
tcgaggagcatttctagatcccctccacgcaggcgctctatttctcctgataggcgatat
cgttctccaattaaacgttccatatctcctcgtcgcaggccgtcaccacgaagacatcga
tcccctctgagacggcgatctccttactcaagacgtagatcgacatcacgttcatggcgc
agatctccttccccagctcgacgcagatctcgctctcctgctcgacgcagatctcgctcc
cctggtcgacgtagatctccctcccctgctcgacgtagatccccttctcctgtgagacgc
agatcccctattcctgtgcgtcgtagatcgccatctcctgtccgacgtcgttctccacct
ccgatgcgcaggaggtctccttcacctcgccggcgcagatctccatcaccttttcaaaga
agatctcgtagaagatcaccaactcctcgacgcagatccccttctccctttcggcgtagg
tcaccatctccgttaggaagcatatcacctcctcgtaggtcaccatctccaatatcacct
aaagtgagcagaagatcaccaatgggatctccccaacaaagaaacaggagtcgtagtcca
tatagaagcaggagtcctgtatatcgaagtcgtaggagcttgagcagggatcgtgagatt
caaactaatggcatgggttctaaaacaaatcgtgatgattatccatcccaaaggattcgt
gggagaaggtcaccagttcggcatacccctgagagggaggaggtcaaattgtctgatcag
gagcacagggcattggatcctgtgtcacgtagaccacaagtttctttgaggtcaccacag
cgggaaccaagaaagcaaagtggtgttcagcgcaaggtacctgttcgggtgcattctccg
gaaaaatctccaagtgggtcagagtccccaccacctaacaggaaagtgatttctggggat
gacaagaggacctttagtccatcagagagtcctctcagggtaacacgagaactgagaaat
cgtgctgaaagtgcaagtcctgtgaggcagataagagatcacggtgctcgtcaccgtggt
agtccagaaactagtggggacgaagatgcgagtcatgccaggaggaatgcacgtctttct
cctcgaaaaagaaccaggctttcgcctgcagctgcttcaaagaacatgcatgacgaagag
tattctcctgaagactctgctcgagatcagcctggtgatgcacggagtcgtcatgcagat
aatgtagaatctagaaagaaggatcgtgattttaagagtgagaaagcttctgtgatggct
gaacgtcctggaaggaatactcaaaatatatcatcacacagttcagacgtagttgactat
gggcatggaagggttgagggtgaaaagtctaagttggatgtcatccctgatgaacaaaca
ggtagcaagaagcggtcccgctcaagcaatttggaaggcaatgaacaaggtgacaaacta
gaagctttgcagaaaccaacaaaaagggttgaccatcagatagccacttctgattctgat
tccgaggaaaatgagaagtataggataggtggagttgacaagagaaaagagaaggaatca
gagaggcatcaaatggcttctggcgatgatgccagtgatgattctcaaatcgataccaag
aaggatgcaaagagaagaaggaaagaagaaaagaggttgcggaaagaagagaagcgcagg
cgtcgtgaagagcgccaccggaaaaaggaagaacgtcgtgcaggcaggctaaaatccaag
tctaaggatacagtgccttcagatactaagaaaaaccagaagtttggtgatgatgatgtt
gctttgaggagggagtctcatctaagtgacactgaagaagatattgatccaaagcaacat
gagattgaactgcgaaagagggctcttgaatcgctcagagcaaagaaagccatcaacccc
taa
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