Papaver somniferum (opium poppy): 113316918
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Entry
113316918 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113316918
09124 Replication and repair
03420 Nucleotide excision repair
113316918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113316918
03400 DNA repair and recombination proteins [BR:
psom03400
]
113316918
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113316918
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113316918
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
113316918
NCBI-ProteinID:
XP_026420867
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All DBs
Position
10:68253056..68258977
Genome browser
AA seq
452 aa
AA seq
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MPQVKIIAKNFMDMVAALPALKLDKLYDNTFICEAVLRSLPPLAKKYVLQLLYIDEPVTA
KSMEDWVLTDGTSKHRVAIDRLIQLRVFLEITDRKKETSYRLNPKFQGNLQHYIVHGGVL
PRESMSSSITVRLPTAEELDSYALEQWESFLLQLISSSQPEKMTSFTSSMMKIFQQGLLS
LRDKEAPKLTESGFQFLLMDTNAQLWYIIREYIINSEVRGVDSADLISFLLELSFHVTGQ
AYNASTLNDVQRSAINDLAELGLIKLQQGRKDNWFIPTKLATNLSVSLSDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYTAFENGITSEQIISFL
QQNAHPRVSDRAAPSVPENVTDQIRLWESDLNRVEVTPANFYDEFPSKDVFEGACDYARD
NGGLLWEDSKRMRLVVKAEIHTLMRDYLHRQK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagtgaagattattgcgaagaattttatggacatggtagcggctctacctgct
ctaaaacttgataagctttacgataataccttcatctgtgaagctgttttgaggtctttg
ccccctttggccaagaaatatgttctacaactgttatacattgacgagccagtgacagcc
aaatcaatggaggactgggttttaacagatggaacttcaaagcatagagtggctattgat
cggttgatacaattaagggtatttcttgagattacagacaggaaaaaggaaaccagttac
agactgaatcccaagtttcagggtaatcttcagcattatatagtgcatggcggagtttta
ccaagggaatcaatgtcttcgagcatcaccgtcaggctcccaactgcggaggagttagat
tcttatgcacttgagcaatgggagagcttcttgcttcagcttataagctcgagccaacca
gaaaagatgacaagctttacctcttccatgatgaaaatcttccagcaaggtcttttgagt
ctaagagacaaagaagctccaaaactaactgaaagtgggtttcagttcctgctgatggat
acaaatgcacagctttggtacataattagggaatacattatcaactctgaggtccgtgga
gtagattcagcagatttgatttcctttcttttagagctcagtttccatgtgacaggccag
gcttacaatgcgagcaccttgaatgacgtacagaggagtgctatcaatgatcttgcagaa
cttggattaatcaaacttcagcagggtaggaaagataattggttcattccgactaagttg
gctacaaatctttccgttagtttgtctgattcttcatcacgcaagcagggatttgtggtg
gtggaaacaaactttcggttgtatgcttactctacttctaaactgcattgcgagattctg
cgcctgtttgcgagagtcgagtatcagcttcccaaccttatagttggagcaataacaaag
gaaagtttgtacactgcttttgagaacggcattacatctgagcagataatttcttttctt
cagcagaatgcacatcctcgtgtaagtgatagagcagcaccatctgtaccagaaaacgtt
acagatcagattaggctgtgggaaagtgatttgaatagagtggaggtaactcctgcaaat
ttctacgacgaattcccttcgaaggatgtctttgaaggtgcttgtgactatgcaagagat
aatggtggattattatgggaagattcaaagaggatgcgattagttgtcaaagcagagata
cataccctgatgcgggactatctacaccgccaaaagtag
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