Paenibacillus sonchi: JI735_14345
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Entry
JI735_14345 CDS
T07264
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pson
Paenibacillus sonchi
Pathway
pson03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pson00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JI735_14345 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pson03400
]
JI735_14345 (ligD)
Enzymes [BR:
pson01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JI735_14345 (ligD)
DNA repair and recombination proteins [BR:
pson03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JI735_14345 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
QQZ63522
UniProt:
A0A974SF22
LinkDB
All DBs
Position
complement(3166946..3167830)
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AA seq
294 aa
AA seq
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MPAAVKGSITVDGQEIIITNPDKPLWPEVGITKRIYLQKLAALSPYLLRYSRDRLLTVIR
YPHGVPGMSFYQKNAPEPLPDFVRTATHDNITYIVLQGLPELLWLGNLAALEFHPSLHYV
GSSLPCEWMIDLDPSLEVEPRIMEAAAVVGEVLQSLGIASVPKTSGATGVQIIVPIRPGV
TFDGLRRIGHFVGRYVTEKRPDLFTLERLKKNRGDNIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQHNVSPADFHLLNIEERLSIMGDLISKVPPQPVEALIPKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcagccgtcaaaggctccatcaccgtcgatgggcaagagattatcatcaccaat
cccgacaagccgttatggcctgaagtgggcattaccaaacggatttatctgcaaaagctg
gccgccctctccccctatctgctgcgttattcccgtgaccggctgttgaccgtgatccgc
tatccgcacggcgttcccggcatgtccttttatcagaaaaatgcgccggagcctttgccg
gattttgtacgtacagcaactcacgacaacattacctatattgtcctgcaagggctgccg
gagctgctctggctgggaaatttagccgcgctggagtttcacccctcactgcattatgtc
ggcagcagtttgccctgcgaatggatgattgacctggacccgtcccttgaggtcgagccg
cggattatggaagcggcggctgttgtaggggaggtactgcaatcattggggattgcctca
gtccccaaaacctccggtgcaaccggagtgcagattatcgttccgatccggcccggagtc
actttcgatggcctgcgccggatcgggcactttgtcggccggtatgtaactgagaaacgc
cccgatctgttcacgctggagcggttgaagaagaaccggggcgacaatatttattttgat
tacctccagcattacgggggcaaaacgctcgccgctccgtacacgccccgtgcccggccg
ctggctacagtctccactcctcttttgtgggaagaggttcagcacaatgtttcgcctgcc
gatttccatctgctcaacattgaggaacgcctgagcatcatgggcgatctgatctccaag
gtgccgccgcagccggtggaagctctgatccccaagcttccttga
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