Paenibacillus sophorae: KP014_08490
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Entry
KP014_08490 CDS
T07500
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psop
Paenibacillus sophorae
Pathway
psop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KP014_08490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psop03400
]
KP014_08490 (ligD)
Enzymes [BR:
psop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KP014_08490 (ligD)
DNA repair and recombination proteins [BR:
psop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KP014_08490 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QWU17187
LinkDB
All DBs
Position
complement(1825361..1826245)
Genome browser
AA seq
294 aa
AA seq
DB search
MPAAVKGSITIEGQEVSVTNPDKPLWPEQGITKRIYLEKLAALSPYLLRYLNKRLLTVIR
YPHGVSGKSFYQKNAPDPLPPYIRTFMHDSINYITLDGLPGLLWLGNSAALEFHPSLHYA
GSSLPCEWMIDIDPSREVEPRIMEAAAIVGDVLKSLGLASVPKTSGATGVQIIVPIRSGV
TFDELRKVGHFVGKYVTEKHSGLFTLERLKKQRGDKIYFDYLQHYRGKTLAAPYTPRARP
LATVSTPLTWDEVANNVSPEDFHLLNIEERLRSKGDLIAQLPPQPVELVIAGLK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgccgtcaaaggctccatcaccatcgaagggcaggaagtctccgttaccaat
ccggataagccgctgtggcccgagcagggaataaccaaacgcatctatctggagaagctt
gccgccctgtcaccgtacttgctgcgctatcttaataaacggctgcttacagtcatacgc
tacccgcacggagtttccggcaagtccttttaccagaaaaacgcgccggacccgctgccg
ccctatatccgtacctttatgcatgacagcattaactatattacgctggacgggctgccc
ggactgctctggctcggcaattctgccgctctggaattccacccctcgcttcattacgct
ggcagcagcctgccgtgtgagtggatgattgatattgatccttcccgggaggttgagcct
cgcatcatggaggcggcggccattgtcggagacgtgctgaaatcgctcggactggcttcg
gtgccgaagacttcgggagcaacaggcgtgcagattatcgtcccgatccgatccggagtt
acctttgacgagcttaggaaggtcggacattttgttggcaagtatgtaaccgagaagcat
tcagggctgttcacgctggagcggctcaaaaaacagcgcggcgacaaaatctatttcgat
tacctccagcattaccgcggcaagacgctggccgccccctatacgccccgcgcccggccg
ctggctaccgtgtccactccgctgacctgggacgaggtcgcaaataatgtttcgccggag
gattttcatctgctaaatatcgaggaacgtcttcgttctaagggcgacctgatcgcgcag
ctgcctccccagccggtagagcttgttatcgccggtctcaaatag
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