Polyodon spathula (Mississippi paddlefish): 121296087
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Entry
121296087 CDS
T07273
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121296087
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121296087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-RING_2
U-box
zf-RING_5
zf-rbx1
zf-ANAPC11
zf-RING_4
PknG_rubred
zf-B_box
Latrotoxin_C
zf-RING_6
zf-Nse
Prok-RING_4
DUF5100
Motif
Other DBs
NCBI-GeneID:
121296087
NCBI-ProteinID:
XP_041077206
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All DBs
Position
21:26426694..26434377
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AA seq
606 aa
AA seq
DB search
MEGVYCALLLCAGFVFCISVSRMAAAVSPVAIIVPEDELKCPICQDLINNPVTIPCGHNF
CMKCINRYLRSTLSSSYSCPHCRKSFSKLPSLHPNTMLRSMIEHTVKSKGLKPDSAVARD
RDVPCDVCTGMKLRAVKTCVNCLASFCDVHLRPHLESGVLRLHRLRDPISDMQEILCKHH
KRLLEYFCKKHWECLCSLCLVKHRKCSTQTVEERREVKEVDYNRKLKAIQNWKDNIQEAI
NTLKDIEVEISVTASQFKADVTTHFVDLREIIAGTQKKAIALIEAEELEALGQTESILEL
LNSKTQKAEEYEEEIIKQINDADLFEFLKHKLVLPPLYETKQLPPPEIKLNGWMVEKITR
ALIALKSTLNAQLESVLNLQETDPGTGDFDLVSGRRKPRSKLIQYASGLTFDSSTSSASV
LLSEDSCAVSVEEADLQAWKDYAVNVDMGFRILCTQSFQNRQHYWEVHPPVDRNSNWAIG
VCYRSASDGYRTLGKDKTSWCIKSRCVYGKEAAGSELPSQGIFAYHDGVVHKIPQQYPRN
VGVYLDCDRGSVSFFSVSDAKATFLYKYQVQFTEPVHPAVWLRETKSKMKIVEQSSSKSH
VSEVMD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggagggagtttactgtgcattgctactatgtgcagggtttgttttctgcatttctgtt
tctaggatggctgctgctgtctctcctgttgcaataattgtgcctgaagatgaactcaag
tgtcccatctgccaggatctgattaacaacccggtgacaatcccctgtggacacaacttc
tgcatgaagtgcattaacaggtacttgaggagtacactctcctcgtcttactcgtgtcct
cactgcaggaaatctttctccaagctcccctccctgcacccgaacaccatgctgcgctcc
atgatagagcacacagtgaaaagcaaagggctgaagccagactctgcagtggcacgagac
agggatgtgccctgcgatgtctgtacaggtatgaagctgagggccgtgaagacgtgcgtg
aactgcctggcttctttctgtgacgttcatctcaggcctcacctggagagcggtgtgctg
aggctgcacaggctgagggaccccatctcagacatgcaggagatcctgtgcaagcaccac
aagaggctgctggagtacttctgtaagaagcactgggagtgcctctgcagtctgtgcctg
gtgaagcaccggaaatgttcgactcagacggtggaagagcggcgagaggtgaaagaggtt
gattataacagaaaactcaaagctattcaaaactggaaagataacatccaggaagcaatt
aataccttgaaggatatagaggttgagataagtgtaactgctagtcagtttaaggctgat
gtaaccacacactttgttgacctcagagagatcattgctggcacacagaagaaagccatt
gctctgattgaagctgaagagctggaagctttgggacaaacagaaagcatcttggagttg
ctgaactcaaaaacccagaaggcggaggaatatgaagaggaaatcatcaaacaaatcaat
gacgcagacctttttgagtttctaaagcacaaactggtgttgcctcctctgtatgagacc
aaacagttgcccccacctgaaataaagctgaatggatggatggttgagaaaataaccagg
gctttaattgccctgaaaagcaccctaaatgcccagctggaatcagtcctgaatctacaa
gaaacagatccaggtacaggggactttgatttggtcagtgggcgacggaagccaaggagt
aaactaatacaatatgcctctggattaacctttgactccagcacttccagtgcctctgtt
ctgctgtctgaagacagctgtgcggtgtcagttgaagaggctgacctacaggcctggaag
gactatgcggtcaatgttgacatgggcttcagaattctgtgcacccaaagcttccaaaac
aggcagcactactgggaagtgcaccccccggtggacagaaacagcaactgggcaatcggg
gtgtgttacaggagtgcatctgatggctaccgcacactgggcaaggacaagacatcgtgg
tgcataaaatcacgctgtgtgtacgggaaggaggctgcaggatctgaattgccttcccag
ggtatttttgcttatcatgacggtgtagtgcataaaatccctcagcagtatcccaggaac
gtgggagtctatctagactgcgataggggatcagtgtctttcttttctgtgtccgacgcc
aaggccactttcttgtataaataccaggttcagttcaccgagcctgtgcatcctgctgtc
tggctgagagagaccaagagtaaaatgaaaatcgttgaacagagctctagtaagagtcat
gtctctgaggtaatggattaa
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