Polyodon spathula (Mississippi paddlefish): 121298001
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Entry
121298001 CDS
T07273
Name
(RefSeq) plexin-A1-like isoform X1
KO
K06820
plexin A
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
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Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
Plexin_RBD
TIG
TIG_2
Sema
TIG_plexin
PSI
RasGAP
Neuroparsin
Motif
Other DBs
NCBI-GeneID:
121298001
NCBI-ProteinID:
XP_041080610
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All DBs
Position
23:11098937..11301523
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AA seq
1887 aa
AA seq
DB search
MKILFDKNPCPFSYLWSLLILGVIASAVAEGTPSVFKTFFTQDWGLTHLVIHNKTGEVYI
GAVNRIHKLSDNLTLLRTHMTGPVDDNEKCYPPPSVQSCPHGLVVTNNVNKLLLVDYTQN
RIIACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVNESGTMSGVIISGPNELKLFIG
TPIDGKSEYFPTLSSRKLKVNEEDAEMFSFVYQDEFVSSQLKIPSDTLSKFPAFDIYYIY
SFSSEQFVYYLTLQLDTQLTSPDASGEQFFTSKIVRLCVDDPKFYSYVEFPIGCKKDGVE
YFLIQDAYLSKPGKHLARSLGISEKEDILFTVFSQGQKNRAKPPKESAMCLFTLRKIKEK
IKERIQSCYRGEGKLSLPWLLNKELACINSPLQIDDNFCGQDFNQPLGGTSTIEGIPLFI
DKEDGMTSVAAYDYRGNTVAFAGTRSGKMKKILVNSVNQAQPALLYENVEVSEGNPILRD
LVFSPDYQNIYTMTEKQVSRVPVESCEQYRSCGACLGSKDPHCGWCVLHNICSRKDKCER
ADEPQRFALDLHQCVQLSIQPQNISVTMSEVQLVLQARNVPDLTSGVNCSFEDLTESEGR
IENGNIYCLSPSAKDVIPITRGQGHKRTVKLYLKSKETGKKFASVDFVFYNCSVHQSCLS
CVNGSFPCHWCKYRHMCTQNAADCSFQEGRVNVSEDCPQILPSTQIYIPVGVVKPITLAA
KNLPQPQSGQRNYECIFHIQGAVISVTALRFNSSSIQCQNTQYFYEGNDISDLPVDLSVV
WNGNFVIDNPQNIQAHLYKCTALRESCGLCLKADPRFECGWCVQEKKCSLRQNCLPQESS
WMHANAGNNRCINPRITKLFPETGPRQGGTKLTIIGENLGLKFRDIQSGVRVGKVPCNPI
ESEYISAEQIVCEVGDATGYRAQEVHVEVCVRDCSQDYKAISPKPFTFVTPSFYRVNPPR
GPLSGGTQITIEGNHLNAGSTITANIGLHSCRFVRRNAKEIVCVTPAGQIPGGAPVMVNI
NWAELRNPEVKYNYTDDPTILRIEPEWSIASGGTSLTITGTNLATIKEPKIRAKYGTAES
FNNCTVYNDTTMVCYAPSVAETEKMIPDSGERPDEIGFIMDNVQSVLVVNGTGFNFFPNP
VFEQLSPSGTLELKPSSPIILKGRNLIPAAPGNSRLNYTVFIGETPCVPTVSETQLLCEW
PNLTGQHKVTIKAGGFEFSPGTLQIYSDSLLTLPAIIGIGGGGGLLLLIIIVVLIAYKRK
SRDADRTLKRLQLQMDNLESRVALECKEAFAELQTDIHELTNDLDGSGIPFLDYRTYAMR
VLFPGIEDHPVLKEMEVQANVEKALTLFGQLLNKKHFLLTFIRTLEAQRSFSMRDRGNVA
SLIMTALQGEMEYATGVLKQLLSDLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLY
KFLKECAGEPLFMLYCAIKQQMEKGPIDSITGEARYSLSEDKLIRQQIDYKTLTLHCLNP
ENENATEVTVKGLNCDTVTQVKEKLLDAVYKGMPYSQRPKAGDMDLAEWRQGRMARIILQ
DEDVTTKIDNDWKRLNTLAHYQVTDGSLIALVPKQNSAYNISNSSTFTKSLSRYESMLRT
ASSPDSLRSRTPMITPDLESGTKLWHLVKNHDHSDQREGDRGSKMVSEIYLTRLLATKGT
LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHQISDSDVRHTWKSNCLPLRF
WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNY
KNWVERYYSDISRMSVISDQDMSAYLAEQSRLHLSQFNSMSALHEIYNYIVKYKEEILSA
LETDEQARRQRLRSKLEQVIDTMALGS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatactttttgacaaaaatccctgcccattctcttacctgtggagccttttaatt
ttaggggtgatagcctcagcagtggcagagggaaccccatcagttttcaaaacattcttc
actcaagactggggcctgacacacttggtgatccacaataaaactggggaagtctatata
ggagcagtcaacaggattcataagctttcggacaacctcactctcttgagaactcacatg
actggcccagtagatgacaatgagaagtgctaccctcctcccagtgtccagtcgtgtccc
catggcttggtagtcaccaacaatgtcaacaaactcttactagtggactatactcagaat
cgcataattgcatgtggtagcgcctctcagggaatctgccagtttctgcggttggacgac
ctcttcaagcttggggagccccaccaccgcaaggaacactacctctccagcgtcaatgag
tctggcaccatgtctggcgttatcatcagtggacccaatgagctcaagctgttcattggg
acccccattgatggcaagtcggagtacttccctacactctccagccggaagctcaaggtc
aatgaggaagatgctgagatgttcagcttcgtctaccaggatgaatttgtgtcctcccag
ctcaagatcccctctgacaccctttccaagtttccagcatttgatatctactacatctac
agtttcagcagtgagcagtttgtgtattacctcaccctccagctggacacccagctgact
tctccagacgctagcggggaacaatttttcacctccaagattgttcgcctatgtgtggac
gaccccaagttttactcctacgtggagttccccattggttgcaagaaggacggagtggaa
tattttcttatccaagatgcctatcttagcaagcccggaaagcacttagctaggtcactg
gggatctcggagaaagaggacatcttgttcacggtcttctcgcagggtcaaaagaaccgt
gccaagccacccaaggagtcggctatgtgcctcttcaccttgcgcaaaatcaaggaaaaa
atcaaggagaggattcagtcctgttacagaggagaaggcaagctgtccctgccctggctg
ctgaacaaggagctagcctgcatcaactcgcccttacagattgatgacaatttctgtggg
caggattttaatcagccactgggtgggacaagcaccattgaaggaatacccttgtttatt
gacaaagaagatggaatgacttcagtggcagcttatgactacagaggaaacactgtcgcc
tttgcagggaccaggagtgggaaaatgaaaaagattctggtaaactctgtgaaccaggcc
cagcccgctttgctgtatgagaacgtggaggttagcgaggggaacccaatcctgcgagac
ctcgtcttcagcccggactatcagaacatctacaccatgacggagaagcaggtgagccga
gtcccagtggaaagttgtgagcagtacaggagctgtggcgcttgcctgggctctaaagat
cctcactgtggctggtgtgtccttcataatatctgctcccgcaaggataaatgtgagcgc
gcagacgagccccagcgcttcgccttggacctgcaccagtgtgtgcagctgagtatccaa
ccacagaacatctccgtcaccatgtctgaggtccagctggtgctacaggcacgcaatgta
cctgacctaacatctggggtcaactgctcctttgaggatttgacggagagtgaggggaga
atcgagaacgggaacatctactgtctctctccctcagcaaaagatgtcatccccattacg
aggggccaaggacataaacgaacagtcaaactgtacctcaaatccaaagagactgggaag
aagtttgcaagcgtcgactttgtgttctacaactgcagcgttcaccagtcttgcctatct
tgtgttaatggatctttcccctgccactggtgcaagtaccgtcacatgtgtacccagaat
gcagcagactgttcattccaagagggtcgtgtcaatgtgtccgaggactgtccccagatc
ctcccttccacccagatctacatcccagtgggggttgtgaaacccatcaccctggctgca
aagaacctcccccagccccagtccggccagaggaactacgagtgcatcttccatatccag
ggcgccgtgatcagcgtcaccgctctgcgcttcaacagctccagcatccagtgtcagaac
acccagtatttctatgaaggaaatgacatcagcgaccttcctgttgacctctctgtggtg
tggaatggaaactttgtcattgacaatccccaaaatattcaagcccacctgtacaaatgc
actgccctgcgggagagctgcggcctgtgtctcaaagccgacccacgctttgaatgcggc
tggtgcgttcaggagaagaagtgctccctgcggcaaaactgcctcccccaagaaagcagc
tggatgcatgccaatgctgggaacaacaggtgcatcaatcccagaatcaccaagctgttt
ccagaaactggacccaggcaaggcgggaccaagctcaccatcattggtgagaatctgggc
ctgaagttccgagatatccaatcgggtgttagagtggggaaggttccctgcaacccaatt
gaatcagagtacatcagtgccgaacagattgtgtgcgaggtcggagatgccactgggtac
agagcacaggaagtacatgtggaagtgtgtgtgagagactgcagccaagattacaaggcc
atctcgcctaaaccattcacctttgtgacccccagtttctaccgtgtaaaccccccaaga
ggtcccttgtctggagggacccagattacgattgaggggaaccatctcaatgcaggcagc
accatcacagctaacattgggcttcactcctgcagatttgtgaggagaaatgccaaagag
attgtgtgtgtgacccctgctggacagatcccaggtggggccccagttatggtgaatatc
aactgggccgagctgagaaacccagaggtcaaatacaactacacagacgacccgaccatc
ttgagaatagagcctgagtggagcatcgccagtggtgggacttctttgaccataacaggc
accaacttggccaccattaaggaaccaaagattcgagccaagtacggcactgccgaatcc
ttcaataactgcactgtgtacaatgacaccaccatggtttgttacgctccttctgtcgct
gaaactgaaaaaatgatcccggacagcggagagcggccggatgagattgggttcatcatg
gacaatgtgcagtctgtgctcgtcgtcaatggaaccgggttcaacttcttcccaaacccg
gtctttgagcaactcagcccctctggcaccctagagctcaaaccaagctctcccatcata
ctcaagggacggaacttgatcccggctgcccccggcaactcccgcctgaattacactgtc
tttattggagaaaccccctgcgttcccacagtatcagagacacagctgctctgtgaatgg
cctaaccttaccggccagcacaaagtcaccattaaagctggtggtttcgagttttctccg
ggaacgctgcagatctactccgacagcctactgactcttccagccatcatcgggatcggt
ggaggcggaggcttgctgctgctcatcatcatcgtcgtcctcatcgcctacaagcggaag
tcccgcgacgccgaccgtaccctgaaacgcctgcaactgcagatggacaacctggagtcc
agagtggctctggagtgcaaggaagcttttgcggagcttcagacagatatccacgagctg
acgaatgacttggacggctctggcattcccttcctggattaccggacctatgccatgaga
gtgctgttcccagggattgaagatcatccagttcttaaagagatggaggtccaggccaac
gttgagaaagcgctgacgctgtttgggcagctgttgaacaagaagcactttctcctgacc
ttcatcaggaccctggaggcccagcgcagcttctctatgcgggaccgcggcaacgtggca
tcgctcatcatgacggcactgcagggcgagatggagtatgccactggagtcctcaaacag
ctcctctcagacctcattgaaaagaacctggagagcaagaaccaccccaagctgcttctc
agaaggacagagtctgttgcagagaagatgctgacaaattggtttacgttcctgctctac
aagtttttgaaggagtgtgccggagagcctctgttcatgctgtactgtgccatcaagcag
cagatggagaagggaccaatagattccatcacaggcgaagcccggtattccctgagtgag
gacaagctgatacgccagcaaatcgactacaagaccctgactctccactgcttgaatcca
gagaatgaaaatgccacagaagtcactgtgaagggtctaaactgcgacaccgtcacccaa
gtgaaggaaaagttgctggacgctgtatacaaagggatgccctactcacagagacccaaa
gcaggggacatggatcttgcagagtggcggcagggccggatggcaaggataatcctgcag
gatgaggacgtgaccaccaagatcgacaacgactggaagagacttaacaccctggcacac
taccaggtgactgatgggtctctaattgctctggtacctaagcagaactctgcgtacaac
atctccaactcctctaccttcaccaaatcactcagcagatacgagagcatgctccgcaca
gccagcagcccagacagcctgcggtcacgtactcccatgatcacacccgacctggaaagc
ggtaccaagctctggcacctggtgaagaaccacgaccactcggaccagcgagagggcgac
cgcggcagcaagatggtctctgagatatacctgacgcggttactcgcaacaaagggtaca
ttacagaagtttgtggatgacctcttcgagacgatattcagcaccgcacaccgtggcagt
gctcttccactagccattaagtacatgttcgacttcttggacgaacaagcagacaaacac
cagattagtgactctgatgtccggcatacatggaagagtaactgcctacctctacgtttc
tgggtgaatgtgatcaagaacccccagtttgtgtttgacatccacaagaacagtattaca
gatgcctgcctctcagtggtggctcaaaccttcatggactcctgctccacgtctgagcac
aagctaggcaaggactctccctccaacaagcttctgtacgcaaaagacattccaaactac
aaaaactgggtagagaggtactattcagatatctctagaatgtcagtaatcagcgaccag
gacatgagcgcctacctggcggaacagtccaggctccaccttagtcagttcaacagcatg
agtgctctgcatgagatctacaactacattgtcaagtacaaagaagagatactgtctgcc
ttggaaacagacgaacaagccagacggcagagactgaggagtaagctggagcaggtgatt
gacaccatggctcttggcagctga
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