Polyodon spathula (Mississippi paddlefish): 121298479
Help
Entry
121298479 CDS
T07273
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03250
Viral life cycle - HIV-1
pspa04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121298479 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
121298479 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121298479 (samhd1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
121298479 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
121298479
NCBI-ProteinID:
XP_041081540
LinkDB
All DBs
Position
23:complement(23766154..23773491)
Genome browser
AA seq
641 aa
AA seq
DB search
MESRKRSRVENSFAGGVYKTPEKKVSNMIVGPSCDYRDWGVEEVCGYLRLMGYGEWQQRF
RDEQITGVGLPYLTESHLEKMGIRPLGVQLELLHCFRKLWLCSSVEKIKIFNDPIHGHIE
LHPLLVRIIDTPQFQRLHYIKQLGGAFFVFPGASHNRFEHSIGVGYLAGRLVQVLHERQP
ELQITQRDMLCVQIAGLCHDLGHGPFSHMFDGKFIPKACPKLDWKHETASLQMFDHLISV
NGLESVMVEHGLELPEDLHFIKEQIAGPTCIPEGDSQETTSWPYKGRTEAKGFLYEIVAN
KRNGIDVDKWDYFARDCHHLGIQNNFDYRRFLKFARVCEVGTKKHICTREKEAGNLYDMF
HTRNCLHRRAYQHKVGNIIETMITEALLKADPYIQIEGSHGKKYAISTAIQDMEAYTKLT
DHIFQQILYSSTPELAEAREILNNVICRKLYKCVGQTQPKCKTKISNDQLDVLASEVAQA
CPQSSTDVKLQAEDFIVNIIYMDYGMKEKNPINNMRFYCKNDPRKAIRIRRDQVSQLLPE
KFAEQLIRVYCKKMDKQSVEAAKKYFVQWCINRDFTKPQDGDISAPELTPLKASWIDESD
SEDDCQGPPNGTLATVKPRIRLFQKERPSVNGKGGTKYSSA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaagccgaaagcgctcgagagtcgaaaactcgttcgccggaggtgtttataaaacc
ccggagaaaaaggtatcaaacatgatagttgggccgagctgtgactatcgtgactgggga
gtcgaagaagtctgcggctatctgcggcttatggggtacggggagtggcagcagcgattc
agagatgaacagattacaggagtgggactgccctaccttacagagtctcacctggagaaa
atgggaattcgcccgcttggggtccagttggaacttcttcactgctttaggaagctgtgg
ttgtgctcttcggttgaaaaaataaagatattcaatgatcccatccatgggcacattgag
ctgcaccccttgcttgttcgtataatagacacccctcagttccagcggctccactacatc
aagcagctcgggggagccttcttcgtgtttcctggagcttcccacaaccggtttgagcac
tccattggggtgggttacctggcgggaaggctggtccaggtgttacatgagcgtcagcct
gagctgcagatcacccagagggacatgctgtgtgtgcagatcgcaggactgtgtcacgat
ctgggtcacggtcctttttcgcacatgtttgatggaaagttcatcccaaaagcttgtcca
aagcttgactggaagcatgagacggcatcactgcagatgtttgatcacctcatctctgtc
aatgggctggagtctgtgatggtagagcatggcctggagcttccagaggaccttcatttc
atcaaagagcagattgcagggcctacctgcatacctgaaggagacagccaggagacgact
tcctggccatataaaggacggacagaagccaaaggtttcctgtacgagatcgtggctaac
aagagaaacggtatagatgtggacaaatgggattactttgcaagggactgccaccacctt
ggcatccaaaacaacttcgactacagacgcttcctcaagttcgctcgtgtttgtgaagtc
gggacaaagaaacacatttgcacgagagagaaggaagctgggaatctgtatgatatgttt
cacacgcggaactgcctccaccgtagagcctatcagcacaaggttgggaatatcattgaa
acaatgattactgaagctctcctgaaggcagatccctacattcagattgaaggatcacat
ggaaagaagtatgcaatctccacagctattcaagatatggaggcttacaccaagcttaca
gatcacatcttccagcagatcttgtattccagcaccccagagctggcagaggcccgtgaa
attctcaataacgttatttgccgtaaactctacaaatgtgttgggcaaacccagcccaaa
tgcaaaacaaagatttcaaacgatcaacttgacgttttggccagtgaggtcgctcaagct
tgcccacagagctctacagatgtgaagctgcaagcagaggatttcattgtcaatatcatt
tacatggactatggaatgaaggagaagaaccccataaataacatgcgcttctactgcaag
aacgacccccgaaaggcaattcggattcgcagagatcaggtgtctcagctactgccagag
aagtttgcagagcagctgatccgggtgtactgcaagaaaatggacaagcagagtgttgag
gctgccaagaaatactttgtgcagtggtgtataaaccgggacttcaccaagccacaggat
ggggatattagcgctccagagctgacgccactgaaagccagctggattgatgagagtgac
tcggaggatgactgccaaggtcctcccaatgggacactagccactgtcaaaccaagaatc
aggctcttccaaaaggaacgccctagtgttaatgggaaaggaggaacaaagtacagttca
gcatga
DBGET
integrated database retrieval system
