Polyodon spathula (Mississippi paddlefish): 121298676
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Entry
121298676 CDS
T07273
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121298676 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
121298676 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121298676 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121298676 (gtf2h4)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121298676 (gtf2h4)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121298676 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
fvmJAB_N
Motif
Other DBs
NCBI-GeneID:
121298676
NCBI-ProteinID:
XP_041081789
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All DBs
Position
24:21357834..21374747
Genome browser
AA seq
452 aa
AA seq
DB search
MKLREQLRCKNLHEFLKEMSPAMLDRLYNHPATCLAVFRELPQLAKNYVMRMLFLEQPLP
QAAVAYWVKKENQKEHDESTGVLTGLRLWHTQQLPGGLQGLILNPIFKDNLRIALLGGGK
AWADDTSQFGPDKHARDIDSLNKYAIERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMRS
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLKTAESRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSDSLLTFLQHLREFGLVFQRKRKSRRYYPTRLAINLAAGVSGTSVDAHNQGFVV
VETNYRIYAYTESELQIALVALFSELLYRFPNLIVAQVTRESVQQAIANGITAEQIIHFL
RTRAHPVMLKQTPVLPPTITDQIALWELERDRLQFSEGVLYNQFLSQVDFEVLRNHAKDL
GVLIWENPQNRVMVVTQAGHSDVKKFWKRQKH
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaaactacgagagcagctgcgatgtaagaacttgcacgagtttctgaaggagatgagc
ccagccatgctggaccggctctacaatcatccagccacctgcctcgccgtcttcagggag
cttccccaattggctaagaactatgtgatgcggatgctgtttctggaacagcccctcccc
caagcagcagtggcctattgggtaaagaaggagaaccagaaggagcacgatgagagcact
ggtgtgctgactgggctccggctgtggcacacacagcagctgcctggaggcctacagggt
ttgatactgaaccccatcttcaaagacaacctgaggatagccctgctgggaggagggaaa
gcttgggccgatgataccagccagttcgggccagacaagcatgccagagatatcgactcc
ctgaataagtatgcgattgagagatgggaggtgattctgcacttcatggtcggctctccc
agtgcagcagtcagtcaggacctggcacagctgctgattcaggcagggcttatgagaagt
gaggccggagatgccccctgcatcacctctgcaggtttccagttcctcttactggacaca
gcctcccagctctggtacttcacactgcagtatctcaagactgccgagtctcgagggatg
gacctggttgaaatcctctccttcctgttccagctcagcttctccactctgggcagggat
tactctgtcgaagggatgagcgactccttgctaacttttctgcagcacctgcgtgagttt
ggacttgtatttcaacgcaagaggaaatcccgccggtattacccaacacgcctagccatc
aatcttgctgccggcgtttcaggcacctctgtggatgcccataaccagggctttgttgtc
gtggaaaccaactacaggatctacgcctacacagaatcggagctgcagatcgccttggtg
gctctcttctcagagttgctctacagatttcccaacctgattgtagcccaggtgaccaga
gaaagcgtgcagcaagctatcgcaaacgggatcacagccgagcagatcatccactttctc
cgaacgagagctcacccagtcatgctgaagcagactccagtcctgcctccaaccatcaca
gatcagattgcactgtgggagctggagagagacagactgcagttcagtgagggggttctg
tacaatcagttcttatcgcaggttgattttgaggtcctgcggaatcacgccaaggatttg
ggggtactgatctgggagaacccccaaaacagagtcatggtggtgacccaagccggccat
tcagacgtcaagaagttctggaaaaggcagaaacattag
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