Polyodon spathula (Mississippi paddlefish): 121300641
Help
Entry
121300641 CDS
T07273
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121300641
03015 mRNA surveillance pathway
121300641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121300641
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121300641
5.6.2.5 RNA 5'-3' helicase
121300641
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121300641
mRNA cycle factors
Common to processing body (P body) and stress granule
121300641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121300641
NCBI-ProteinID:
XP_041085210
LinkDB
All DBs
Position
26:1909909..1974881
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGAVDDAAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIANFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRSNQGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLMMPPIPPPGYFGQANGPAAGRGALKGKAGRGGRQRNRGIVNQGNSQCNLPNS
QASQDAASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcacagactctcaccttcctggacacggaggaa
gcggagctgctgggagctgacacgcagggctcggagttcgagtttactgacttcactctg
ccgagtcagacccagacccaggggcaaactcagagccagttggacaatcaggttaatggt
cctgatggagttctgcagaatggggcagttgatgatgcagctaaagcaagccaacttctt
gctgaactgaattttgaagaagatgaggaggatacttattacaccaaggaccttccagtg
catgcctgcagctactgtggaatacatgacccagcctgtgtggtttactgcaataccagt
aagaagtggttctgtaatggacgaggaaatacttcaggcagccacattgtgaaccacctt
gtcagagcgaaatgtaaagaagtaactctgcataaagatgggccgcttggagagactgtc
ttggagtgttacaactgtgggtgtcgcaacgtttttcttttgggcttcatccctgccaag
gctgattctgttgttgtactactgtgcagacagccttgtgccagtcaaagcagcctgaag
gatatcaactgggacagttctcagtggcagcccctgatccaagaccgctgcttcctttcc
tggctggtaaagattccttctgagcaggagcagctgagagcgaggcagatcacagctcag
cagatcaacaaactggaggagctctggaaggaaaacccttcagccactcttgaggatctg
gagaaacctggagtggatgaggagccacagcatgttctactccgctatgaagatgcctat
cagtaccagaacatcttcggaccacttgtcaagctggaggctgactatgataagaaactc
aaggaatctcagacacaggataatataactgtgaggtgggacctgggtctcaacaaaaag
cgaattgccaacttctctttgcccaagactgactcaggtgacatgcgtttaatgcaagga
gatgagatttgtctgaggtacaaaggagacctggctcccttatggaaaggaattggacat
gtcatcaaagttccagacaattatggagatgaaattgctattgagttgagaagcagcgtt
ggtgcccccgtcgaagttcctcacaatttccaggtcgactttgtttggaaatcaacttcc
tttgacaggatgcaaagtgctctgaagacctttgcagtggatgagacctctgtgtctgga
tacatttaccataaactgctggggcacgaagtggaagatgtcatcataaagtgtcagctg
ccgaagcgcttcactgcccatgggctccctgaccttaaccattctcaggtttatgcagtg
aagactgtgcttcagcgtcctctcagccttattcagggccccccagggacaggaaaaact
gttacatctgctaccattgtgtaccatctggccaggcagggcaatggaccagtgctcgtg
tgtgctccaagtaacattgctgtggatcagctgacggagaaaattcaccagactggactt
aaagttgtaaggctttgtgctaagagcagggaagccattgattctcctgtatctttcttg
gcattgcacaaccagatccgtaacatggatagtatgcctgaacttcagaagttgcaacag
ctgaaagatgaaactggggaattgtcctctgcagatgagaagcgctatcgagcattgaag
cgcacagctgaaagggagctactgatgaatgctgatgtgatctgttgcacctgtgttgga
gccggggacccacgtttagctaaaatgcaattccgctcaattctgattgatgagagtacc
caagctactgaacctgaatgcatggtgcctgtggtgttgggagcaaaacagttgatcctt
gttggtgatcattgccagctaggtcctgttgtcatgtgtaagaaagcagccaaagcaggc
ctgtcccagtctctgtttgaacggctggtggtgctggggatccgtcccattcgtttgcaa
gtacagtaccgtatgcacccagcactcagcgcctttccatccaacatcttctatgagggt
tcccttcagaacggagtcactgcagctgaccgcattaagaaggggtttgacttccaatgg
ccacagccagacaagcccatgttcttctatgtaactcaaggacaggaagaaattgcaagc
tcaggaacttcctacttgaacagaactgaggctgctaatgtggaaaagatcaccacaaag
cttctgaaagcaggagccaaacctgaccagattggaattattacgccctatgagggtcag
cgctcttacttggtgcaatacatgcagttcagtggctctctgcacactaaactttatcag
gaggttgagattgccagtgtcgatgctttccaaggacgtgaaaaagacttcatcattctg
tcttgtgtcagagctaatgaacatcagggtataggattcttaaatgatcccagacgtctc
aatgtggctcttactagggcaaggtatggtgtgattattgttggcaaccccaaggctttg
tccaagcagcctctctggaaccaccttctgaactattacaaggagcagaaggtcctggtt
gagggaccgctgaacaatctgcgagagagcctcatgcagttcagcaagcctcgcaagctg
gttaatactataaatccaggagcacgatttatgagtacagctatgtatgatgccagggaa
gcactcatcccaggatcggtgtacgaccggagcaaccaggggcgcccttcgaatatgtac
tttcagacccacgatcagatcggaatgattggtgctggtcccagccatgttgctgcaatg
aacattcccatccccttcaatctcatgatgccacccatacctcccccaggatacttcggc
caggctaatggcccagcagcaggcaggggggcactaaaggggaaggctggccgcggagga
cgccagagaaatcgtggcatcgtcaatcagggaaatagccagtgcaacctgcctaacagc
caggccagtcaggacgctgcgtcccagccgttttcacaggggccgctgactcagggctac
atctctatgagccagccatctcaaatgagccagccaggcctttctcagccagaactgtca
caggacagttatttgggtgatgaattcaagtcccagattgatgtggcgttatcacaggat
tctacttaccagggtgaacgtgcttaccaacatggcggggtgactggactgtcacagtac
tag
DBGET
integrated database retrieval system
