Polyodon spathula (Mississippi paddlefish): 121304302
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Entry
121304302 CDS
T07273
Name
(RefSeq) tripartite motif-containing protein 16-like protein
KO
K12006
tripartite motif-containing protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121304302
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121304302
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_6
Nis1
U-box
Prok-RING_4
DUF5764
LRIM1_dimer
Motif
Other DBs
NCBI-GeneID:
121304302
NCBI-ProteinID:
XP_041091297
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Position
37:4612992..4624135
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AA seq
574 aa
AA seq
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MAANILVGEDQFSCSVCLEILKNPVAIPCGHSYCMVCIKNCWDQTDHTGVYSCPQCRNTF
TPRPDLCRNTVLAEVVEKLKKTGFNPLPAQSYARPGDVPCDFCTGRKFKAVKSCLTCLAS
YCETHVKPHSEVTPLKRHRLVNAIGNLEQKLCAEHQRLCEVFCRTDQIFICWLCADKEHK
SHDTVSAETERTGKQKQLRETQTEIQQRIQERLKEVEELKQAVVSLKRSTCIEIKESEKI
FTELIRSIEKIHTEVIQLIGAHEKAAVNQAEGLMKKLEQEIAELRRRNAELKQLSETEDH
IHFLQNFQSHCAHEAGELPSITVNTDISFGAVRKAVSELKDHIEDFCKGGLVKINKTVNE
TAVYTLGSRSSDRCLKVNEVAVYGLQAPNPRNRAEFLKYSCQPTLDPNTAHRNLCLSEGN
RKVTRRGETQRCPDNPERFDSRSQVLCREGLFGTRYYWEIECSGRGADIGVAYKGISRKG
VDRSCILGLSDKSWSLSCSDSNYTAWHNNNQTAITAPHSPRIGVYLDFNAGILSFYGVSD
TMTLLHRFQTTFTEPLYPGVFVYPKSTATVCQLN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaatattctggtaggagaggatcagtttagttgttcagtgtgtctggagata
ctgaagaacccagtcgctattccatgtggacacagttactgtatggtgtgtattaagaac
tgctgggatcagactgatcatacaggtgtctacagctgcccccagtgcagaaacaccttt
accccaaggcctgatctgtgcagaaacaccgtgctggctgaagttgtggagaaattaaag
aagacaggatttaacccccttcctgctcaaagttatgctagacctggagatgtgccgtgt
gatttctgcactgggagaaagttcaaagctgtgaaatcctgtttgacgtgcctggcctct
tactgtgaaacacacgtcaagccacacagtgaggttactccattaaagaggcacaggctg
gtcaatgcaattggaaatctggagcagaagctttgtgctgaacaccaacgattatgtgag
gtcttctgtagaaccgatcagatatttatttgctggctgtgtgcagacaaggaacacaag
agccatgatacagtctcagctgagacagaaaggactgggaaacagaagcagctgcgagag
acacagacagaaatacaacagagaatccaagagagactgaaagaagtggaggagctgaaa
caggctgtggtgtcattgaaaagatctacatgcatagaaataaaggaaagtgagaagatc
tttactgagctgatccgatccattgagaagatccacactgaggttattcagctgattgga
gctcatgagaaggctgcagtgaatcaggctgaaggactcatgaagaaactggagcaggag
attgctgagctaaggaggagaaatgctgagctgaaacagctttcagagacagaggatcac
atccattttctacagaatttccagtctcactgtgcccatgaagctggagagttacccagt
attactgtcaatacagacatctcttttggggctgtgaggaaagctgtgtctgaacttaaa
gaccatattgaggacttctgcaaggggggattagtcaaaataaacaaaacagtgaatgaa
acagcagtttataccctggggtctaggagcagtgatagatgtttaaaagtgaatgaagtt
gcagtttacggtctgcaagctccaaatccaagaaacagagctgagtttttaaaatattcc
tgtcagcccacactggaccccaacacagcacatagaaacctctgtctgtctgaagggaac
agaaaggtgacacggaggggagagacccagcgatgtcctgataatccagagagatttgac
agtcggtcccaagtgctttgcagagagggtttgtttgggactcgctattactgggagatt
gagtgcagtgggaggggtgctgatataggagtcgcatataaaggaatcagcaggaaagga
gtagatcgttcctgtatccttggactcagtgacaagtcctggagtttgtcctgctctgat
tcaaattacactgcctggcacaataacaatcaaactgcaataactgccccccactccccc
agaataggagtgtatctggactttaatgccggcattctgtccttttatggcgtctctgac
acaatgaccctcctgcacagattccaaaccacattcactgagccgctatatcctggggtt
ttcgtttatcctaaatccactgcaacagtctgccagctgaactaa
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