Polyodon spathula (Mississippi paddlefish): 121304931
Help
Entry
121304931 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121304931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121304931
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121304931
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121304931
RNA polymerase I system
121304931
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
121304931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
Spt5-NGN
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
121304931
NCBI-ProteinID:
XP_041092303
LinkDB
All DBs
Position
40:complement(12594..25650)
Genome browser
AA seq
887 aa
AA seq
DB search
MPHTFPLQIKSVVAPEHVKGYIYIESYKQTHVKAAIEGVGNLRMGFWNQQMVPIKEMTDV
LKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLK
DWFAKRKKFKRPPQRLFNDEKIRSLGGDVTTDGDFLIFEGNRYSRKGFLFKSFAMSAVIT
EGVKPTLSELEKFEDQPEGIDLEVVTEMTGKERAHNLQAGDNVEVCEGELIHLQGKILSV
DGNKITIMPKHEDLKDPLEFPAQELRKYFKMGDHVKVIAGRYEGDTGLIVRVEENFVILF
SDLTMHELKVLPRDLQLCTETASGVDAGGQHEWGELVQLDPQTVGVIVRLERETFQVLNM
HGKVITVRHQAVTRRKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGHEGEIRHLFRGFAF
LHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTVGGFAPMSPRITSPMHPSGGGGQQQ
RGGQGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTI
SVDRQRLTTVGAKRHGGMTSTHGRTPMYGSQTPMYGTGSRTPMYGSQTPLHDGKRAERGR
REGGGGXIIAYKQSQKVGLNGGQXNQPECFRTAEEDFEYGYDDEPSPSPQGYGGTPNPQT
PGYPEVPSPQVNPQYNPQTPGTPAMYSTDQYSPYAAPSPQGSYQPSPSPQSFHQVAPSPV
GYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSSIDQSSCDW
VTTDILVLVRDTFPDSQVVGATGVIRSVSGGMCSVFLQGTDKVVSISSEHLEPLTPTKND
KVKVILGEDREATGILLSIDGEDGIVRMELDELLKILNLRFLGKLEV
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacacattccccttgcagatcaagtccgtcgtggcccccgagcacgtgaagggc
tacatctacatcgagtcgtacaagcagacccacgtcaaggctgccatcgagggcgtgggg
aacctgcgcatgggcttttggaaccagcagatggtccccatcaaggagatgacggacgtc
ctgaaggtggtcaaagaggtgaccaacctgaagcccaagtcctgggtccggctcaagagg
ggcctgtacaaggacgacatcgctcaggttgactatgttgaaccgagtcagaatacaata
tctctgaaaatgattcccagaatcgattacgaccgaatcaaagctcgcatgagcctgaaa
gactggttcgccaagagaaagaagtttaagagaccaccgcaaaggcttttcaacgatgaa
aagatcaggtccctgggcggtgatgtcaccactgacggagacttcttgatttttgaagga
aatcgctacagccgaaagggcttcctgttcaagagctttgccatgtcagctgttatcaca
gaaggagtgaaacctactctctccgaactggagaagtttgaagaccagccagagggtatt
gacctggaagtggtgacagaaatgacgggtaaagagcgcgcgcacaacctgcaggctgga
gacaacgtggaggtgtgcgagggcgagctcatccacctgcagggcaagatcctgagcgtg
gacgggaacaagatcaccatcatgcccaaacacgaggacctcaaggaccccctggagttc
ccagctcaggagctgcggaagtacttcaagatgggggaccacgtgaaggtgatcgcgggg
cgctacgagggggacaccgggctcatcgtcagggtggaggagaatttcgtcatcctcttc
tctgacctcaccatgcacgagttgaaggtgcttcccagggacctgcagctctgcaccgag
acagcgtcgggggtggacgcaggggggcagcacgagtggggggagctggtccagctggac
ccgcagactgtgggggtgatcgtgcgcctggagagggagaccttccaggtactgaacatg
catggcaaggtgatcacagtgaggcaccaggcggtgacgaggaggaaggataaccgattt
gccgtcgctctggactcggagcagaacaacattcacgtgaaggacattgtgaaggtcatc
gacgggccgcactcggggcacgagggggagatcaggcacttgttccgcggttttgccttc
ctgcactgcaagaagctggtggagaacggaggcatgtttgtctgcaagacacgccacgtt
gtgctggctggaggctctaagcccagagatgtaacaaatttcacagtgggagggttcgcc
cccatgagcccccgaatcaccagtccgatgcaccccagtggaggaggaggccaacagcaa
agaggcgggcaagggggtgggggaggaggaatggggcgtggccgaggaaggagagacaac
gacttgattggacagactgttagaatttcacaggggccatacaaaggctacatcggggtg
gtgaaagatgccacagagtcgactgctcgcgtggagctgcactccacctgccagaccatc
tctgtggatcgacagcggctcaccacggtgggggcgaagagacatggaggaatgacctca
acgcatgggcggacccccatgtatggctcccagacccccatgtacgggacaggatcccga
acacccatgtatggctctcagacgcccctgcacgatggtaagagggcagagagagggagg
agggagggagggggaggttaaattattgcctataaacaatcccagaaagttggcttgaac
ggggggcagtgaaaccagcccgaatgtttcagaacggcggaagaggatttcgagtacggg
tacgacgatgagccctcgccctccccgcaagggtacggggggacccctaacccgcagacc
ccagggtaccccgaagtaccgtctccacaggtcaacccccagtacaacccccagacgcca
ggaaccccagcaatgtacagcacagaccagtactctccctatgctgccccatctcctcag
ggctcctaccagcccagccccagtcctcagagcttccaccaggtggcgccaagtcccgtc
ggttaccagaacacccattctccagccagctaccaccccaccccctcgcccatggcatac
caggccagcccaagccccagcccagtgggttacagcccgatgacccccggagcgccctct
cctggcgggtacaaccctcacacccccggctccagcatcgaccagagctcctgtgactgg
gtgaccacggatatcctggtgctggttcgagacaccttcccggacagccaggtggtggga
gcaactggggttatacgcagtgtctcgggtggcatgtgctcagtgtttctacagggcact
gacaaagtcgtcagcatctccagcgaacatcttgaaccgctaacgccaaccaaaaacgac
aaggtgaaggtgattttgggagaggaccgtgaagccactggcatcctgttgagtatcgat
ggggaggatggtattgtgaggatggagctggatgagctgttgaaaatcctgaaccttcga
ttcctgggcaagctggaagtgtga
DBGET
integrated database retrieval system
