Polyodon spathula (Mississippi paddlefish): 121306122
Help
Entry
121306122 CDS
T07273
Name
(RefSeq) tripartite motif-containing protein 16-like protein
KO
K12006
tripartite motif-containing protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121306122
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121306122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-B_box
zf-RING_2
zf-RING_5
zf-RING_4
zf-Nse
zf-RING_6
U-box
NAPRTase_N
Myb_CC_LHEQLE
Prok-RING_4
Exonuc_VII_L
DUF1149
Motif
Other DBs
NCBI-GeneID:
121306122
NCBI-ProteinID:
XP_041093772
LinkDB
All DBs
Position
46:1978983..1986565
Genome browser
AA seq
558 aa
AA seq
DB search
MAETNIQVTEEQFKCSVCLGIFKRPVTIPCGHSFCMECIENYWDISDQFRCPHCRQIFNQ
KPVLGINIILVEFVENFKKAKLNPRSYAGPGDVPCDFCTGKKLKAVKSCLTCLASYCKKH
IKSHSEVVAFKRHKLVSAIGNLEQKLCAEHHRVLDGFCRNDKTCICWFCTDKGHKSHDTV
SAETERIEIQDQLGETQTEIQRRIQKRLEEQLELVKNVELCKLDVNREVEESEMIFDELI
QPIVKIRDEVIGMIRDIEKKELAKSEEPSKKLEQEIAELRRRSAELKQLSETEDHIHFLQ
HIHAVIALSEVEEIPGFTVNKDISFGTVRKAASELKGHIQVMCKGELAKITKTVNEVAVQ
QSLRPPEPNDRAELLNYSCELTLDPNTVNRVLWLHEGNRKVTWRSTMTQPYPEHPQRFDY
WPQVLCKEGLFGARYYWEIEWIGEGAYIAVTYKGISRKGDDVSRIFGCNDKSWSLQCSVS
NYSACHNYRETVITAPRSPRIGVYLDCPAGTLSFYGVSDTMTLLHRFQTTFTEPLYPGFG
VTCNSTLTILRSEVDSVL
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcagagacaaatattcaggtcacagaggagcagtttaagtgttcggtgtgtctgggg
atattcaagcgccctgtcactattccatgtggacacagcttctgtatggagtgtattgag
aactactgggatatttccgatcagttcaggtgcccccactgcagacaaatttttaaccaa
aagcctgttcttggcataaacatcattctggttgagtttgtggagaatttcaaaaaggca
aagctcaatcctcgcagttatgcaggacctggagatgtgccgtgtgatttctgcactggg
aaaaagttaaaagctgtgaaatcctgtttgacgtgcctggcttcttactgtaaaaagcac
atcaagtctcatagtgaagttgttgctttcaagaggcacaagctggtcagtgcaattgga
aatctggagcagaagctttgtgctgaacatcacagagttttggacgggttctgtagaaat
gataagacatgcatttgctggttttgtactgacaagggacacaagagccatgatacagtc
tccgctgagacagaaaggatagagatacaggatcagctgggggagacacagacagaaata
cagcggagaatccagaagagactggaggaacagctagagctggtgaagaatgtggaattg
tgcaaacttgatgtgaacagagaggtagaggagagcgagatgatatttgatgaactgatt
caacccattgtgaagatccgggacgaggttattgggatgattcgagacattgagaaaaag
gaactagctaagagtgaagagccctcgaagaaactggagcaggagattgctgagctgagg
aggagaagcgctgagctgaaacagctttcagagacagaggatcacatccattttctacag
catattcacgctgtcattgccctttccgaagttgaagagataccaggcttcactgtcaat
aaggacatctcttttgggactgtgaggaaagcagcgtctgaactgaagggtcacattcag
gtcatgtgcaagggggagttagccaagataaccaaaacagtgaatgaagtagcagttcag
cagagtctacggcctccagagccaaacgacagagcagagttattgaattattcctgtgag
ctcacactggaccccaacacagtgaacagggtgctgtggctgcatgaagggaacagaaag
gtgacatggaggagcacaatgacccagccatatcctgaacacccacagagattcgactac
tggccccaagtgctttgtaaggagggtttgtttggggctcgctattactgggagattgag
tggattggggagggggcttatatagcggtcacatataaaggaatcagcaggaaaggagat
gatgtttccaggatctttggctgcaatgacaagtcttggagtttgcaatgctctgtttcc
aattactctgcctgtcacaattacagggaaactgtaataacagcccctcgctcccccaga
ataggagtgtatctggactgtcctgccggcactctgtcattttatggcgtctctgacaca
atgaccctcctgcacagattccaaaccacattcactgagccgctctatcctgggtttgga
gttacttgcaactccactttaacaatcctgagatctgaagtagactcagtcttataa
DBGET
integrated database retrieval system
