Polyodon spathula (Mississippi paddlefish): 121307359
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Entry
121307359 CDS
T07273
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121307359 (lig1)
03410 Base excision repair
121307359 (lig1)
03420 Nucleotide excision repair
121307359 (lig1)
03430 Mismatch repair
121307359 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121307359 (lig1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121307359 (lig1)
Enzymes [BR:
pspa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121307359 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
121307359 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121307359 (lig1)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121307359 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121307359 (lig1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121307359 (lig1)
NER (nucleotide excision repair)
Other NER factors
121307359 (lig1)
MMR (mismatch excision repair)
Other MMR factors
121307359 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
121307359
NCBI-ProteinID:
XP_041095489
LinkDB
All DBs
Position
55:complement(1232983..1252136)
Genome browser
AA seq
1099 aa
AA seq
DB search
MQRSIASFFQPKGGKEKIEAKKTVKKDEEAKDKKEPLKSPLKPQNGVQESDSPVKRSVKR
CRAILDSEDEEPESKDQPGDRKAQGDASTAQPEKKPDLPESPPPSMKTDPSFSADSPSDQ
SPVTEASGTSPSGIPKRRTARKQFPKRKLESSTEGQSQSSEEGESKGSEPKRVRREEADA
EATGEDMEVTGERLPKNNTEIENADVERVHKEGEGSPKQEEKEATSPEQEVTVVVKVNPE
AKSPGVKGKKSPKQEVRKAKIKNSPKQDVKKAKQEPEEEVKSPEGNRKLVLSEEEGKAEP
PKKKPISSFFAPRKAAAKLEKPGDKPANQLPSPEGGSSKETKPANQLPSPEGGSSKETKP
ANQLPSPEGGSSKETKPANQLPSPEGGSSKETKPANQLPSPEGGSSKETKPANQLLSPEG
GSSKETKPASFFGGSAKTPAAQETATDYNPSKQKYDPVNDACWSHGQRVPYLAVSRTFER
IEEESARLRIVEILSNLFRSIVVLTPSDLLPCLYLCLNQLGPAFLGLELGVGETVLMKAV
AQATGRQLDRIKAESQEKGDLGLVAESSRSNQRMMFTPPKLSAVGVFSKLSDIAKMTGNA
SMNKKIEIIKGLFVACRFSEARYIVRSLGGKLRIGLAEQSVLAALAQAVCLTPPGQEFPP
AVLDAGKGMTSDFRKAWIDEKTLLLKQTYCELPNYDVIVPVVLKEGIDELSKHCKLTPGV
PLKPMLAHPTKGIGEVMKRFDEAAFTCEYKYDGERAQIHVLENGEIHVYSRNQENNTSKY
PDIIARIPEVKKENVLSCIIDAEAVAWDREKRQIQPFQVLTTRKRKDVDASDIKVQVCVY
AFDLLYLNGESLVRQPLSRRRWLLRDCFVEKEGEFVFACAIDSDNTDAIAEFLEQSVKDS
CEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAFLGKGKRAGTYGGF
LLACYDDENEEYQSICKIGTGFKDEDLETHFNFLKDHTLPKPRPYYRVDQSTAPDVWLDA
VQVWEVKCADLSLSPVHKAAMGLVDPVKGISLRFPRFLRIRDDKKPEDATNGSQVADLYR
KQQQVQNQGSEKTDQEDYY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatagcgtcgtttttccagccaaaaggaggaaaggagaaaatagaggcg
aaaaaaacagtcaagaaagacgaggaggcgaaagacaagaaagagcccctcaaatctccc
ctgaagcctcagaatggagtgcaggagtccgattcaccggtaaaaaggagtgtgaagaga
tgtcgagcgatcctagacagcgaggacgaggagccggaaagcaaggaccagcccggtgac
agaaaggcccagggggacgcgtccactgcacaacctgaaaagaaaccggatctccccgaa
tctccgcctccctccatgaaaacagaccccagtttcagtgcggattcccccagtgatcag
tcacccgtcactgaggcttctgggacatctccgtccggcattcccaaacgaaggactgct
cggaaacagtttccgaagaggaagctggagagctcaacagaggggcagagccagtcctcg
gaggaaggagagtcaaaagggagcgagccaaagagagtgcgacgagaggaggcggacgca
gaagcgactggggaagacatggaggtcacgggagaaagattacccaaaaataatacggag
atcgaaaatgccgacgtggaaagagtacacaaggagggggagggttcacccaaacaggaa
gagaaagaggcaacatcgcccgaacaggaagtgacagtagtagtcaaggtgaacccggaa
gcgaagagcccaggggttaaaggtaaaaagtcgcctaaacaggaagtgagaaaagccaaa
atcaaaaattcgccgaaacaggatgtgaaaaaagcgaagcaggagccagaagaggaagtt
aaaagcccagagggaaacaggaagttggtgctgtccgaggaggaagggaaggcggaacca
cccaagaagaaaccaatcagcagcttctttgcgcctagaaaagccgctgccaagttagag
aagcccggtgacaaaccagccaatcagctcccgtctcctgaaggaggcagcagcaaggag
accaaaccagccaatcagctcccgtctcctgaaggaggcagcagcaaggagaccaaacca
gccaatcagctcccgtctcctgaaggaggcagcagcaaggagaccaaaccagccaatcag
ctcccgtctcctgaaggaggcagcagcaaggagaccaaaccagccaatcagctcccgtct
cctgaaggaggcagcagcaaggagaccaaaccagccaatcagctcctgtctcctgaagga
ggcagcagcaaagagaccaaaccagccagttttttcggcgggtcagcaaagactccagct
gcccaggagaccgccacagattacaatccatcaaaacagaagtacgatcctgtgaacgat
gcctgctggagccacggccagagagttccctatctggctgtgtcccgaacgtttgagaga
attgaagaggagtctgccaggctgcgtattgttgagatcctcagcaacctgttccgctcg
atagtggttctgaccccttcggacctgctgccctgtctgtacctctgtctgaaccagctc
ggacccgccttcctgggcttggagcttggggttggcgagactgtgctcatgaaggctgtt
gcccaggcaaccggtcgtcagctggacaggatcaaggcggagtctcaggagaaaggcgat
ctgggattggttgccgagagttcccgtagcaaccagcgtatgatgtttactcctcctaaa
ctgagtgccgtgggagttttcagcaagctgagtgacattgccaaaatgacggggaacgcg
tccatgaacaagaagattgagatcatcaaagggctgtttgtggcctgtcgattctctgaa
gctcgctacattgtgcgatccctgggcggcaaactgcgcattggacttgcggagcaatct
gtactggcagctttagcacaggcagtctgtctgacacctccaggacaagaattccccccc
gcggtgctggatgctggaaagggaatgaccagcgattttcggaaagcctggatcgatgag
aaaacccttctcctcaagcagacgtactgtgagctgcctaactatgatgtcattgtgccg
gttgtcctaaaggaaggaattgatgaactttcgaaacactgcaaactgactccaggggtg
cctctgaagcccatgctggcccaccctacgaaaggaatcggggaggtcatgaagaggttc
gatgaagccgctttcacctgtgaatacaaatacgatggagagagagctcagatccacgtt
cttgagaatggagagattcacgtttacagtcgaaaccaagaaaacaacaccagcaaatac
cctgatatcattgccagaataccagaggtaaagaaggagaatgttctatcttgtattatt
gatgcggaggctgtggcttgggacagggagaagaggcagattcagccttttcaagtgctt
accacccgcaagagaaaggatgttgatgcctcggatatcaaggttcaagtctgcgtgtac
gccttcgatctgctttatctcaacggagagtccctggtccgacagcccctgtctcgaagg
cgctggctgctcagagactgtttcgttgagaaggaaggggagtttgttttcgcctgcgct
atcgattccgacaacactgacgccattgcggaattcctggaacagtcggtcaaagactct
tgtgaagggctcatggtaaaaacgctggaaaaagatgctacctacgagatcgcaaagaga
tcgcacaactggctgaagttaaagaaagattacctggatggcgttggcgacactttggac
ttggttgtgattggtgcgtttctgggcaaaggaaagagagcagggacgtacggaggcttc
ctgttggcttgctatgatgacgagaacgaggagtaccagtccatctgcaagatcggaaca
ggattcaaagatgaagatttggagacgcatttcaacttcctcaaggaccataccctgccg
aaaccccgcccctattaccgcgtggaccaatctacagcgccggacgtgtggttggatgca
gtccaagtgtgggaggtcaagtgtgctgacctttcactgtcacctgttcacaaagcagcc
atgggattggtggatccagttaaaggcatctcgctgcgcttcccaaggttcttgagaatc
agagatgacaagaagccagaagacgccaccaatggctcgcaggtggcagatttgtacagg
aaacagcagcaggtacaaaaccagggttctgagaagactgaccaggaggattattactga
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