Polyodon spathula (Mississippi paddlefish): 121307840
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Entry
121307840 CDS
T07273
Symbol
rbck1
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04217
Necroptosis
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121307840 (rbck1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121307840 (rbck1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121307840 (rbck1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121307840 (rbck1)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121307840 (rbck1)
Multi subunit Ring-finger type E3
LUBAC complex
121307840 (rbck1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IBR
ubiquitin
zf-RING_5
zf-RanBP
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
121307840
NCBI-ProteinID:
XP_041096064
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All DBs
Position
59:663120..673798
Genome browser
AA seq
531 aa
AA seq
DB search
MASVEDSISHTSKAKTSKAEELALTLTQAISLGDVEEANQCAGQLAKLQVSVTVSVHKDT
YPKDEIRMKVGVEDAQSQSTVPISMAVYSHMTIAQLKEKVNSDYGFHPSLQTWVIGKRLA
KDPDTLGSHGVKRDGDTAFLYIRTAKKAQLTKELQQQEEERKLLGEIYTAVNGTLKARGT
ATLTPKKEMLVFAPDPAVAPKLPKPAPPPLKPKPKVGWECTRCTFLNKPTRPGCEICASD
RPAGYQIPAQYQPDKEEEERLHSEEMAMLLYQETMELQKVQNFQSLLDTDLLSLVPNSEE
LDCPVCFSTIEPGEGVTLRECLHNVCRECLKGTIINSVDPEVACPYADHEYTCDGKLQDR
EIKSLLSQQEYQRFLDLRLNIAENRSENSYHCKTADCQGWCIFEDEVNEFLCPLCNKHNC
LLCKAIHEGMNCKEYQDDLRIRSENDIAARQTTEMLKTLVENGEAMHCPRCKIIVQKKDG
CDWICCVMCKTEICWVTRGPRWGPNGHGDTSGGCGCRFNVARCHPNCQNCH
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggttgaagactcaatttcacacacctcaaaagctaagacaagtaaagctgaa
gagttggccctgaccctgactcaggctattagtttgggggacgtggaggaagccaatcaa
tgtgcaggccagctggcgaagctgcaggtctctgtcacagtcagtgtccacaaggatacc
tacccaaaggatgaaatccggatgaaggtgggagtggaagacgcccagtcccagtctact
gtccccatctccatggctgtgtattcacacatgaccatcgcacagctgaaggaaaaggtg
aacagtgactatgggttccacccgtcactgcagacctgggtgatagggaagcgcctggcc
aaggaccctgacacgctggggagccacggggtgaaacgagacggggacacagccttcctg
tacatcaggacagccaagaaagcacagctgaccaaggagctgcagcagcaggaggaggag
aggaaactgctcggggaaatctacacagctgtcaatggaacactcaaagcccgggggaca
gctaccttgacccccaagaaggaaatgctggtgtttgctcctgaccctgctgtagccccg
aaacttcccaaacctgcaccccctcctctcaaacccaaacctaaggttggctgggagtgc
actcggtgcaccttcctgaacaagcccacccggcccggctgtgagatctgcgcctcggac
agaccggcgggctaccagatcccagcccagtaccagccggacaaggaggaggaggagagg
ctgcacagcgaggagatggcgatgctcctgtaccaggagacgatggagctgcagaaggta
caaaacttccagagcctgctggacaccgatctgctcagccttgtccccaacagcgaggag
ctggactgccctgtctgcttcagcaccattgagccaggagagggcgtcactctgcgggag
tgtctgcacaacgtctgcagggaatgcctgaaaggaacgattatcaacagcgtggacccc
gaggtggcctgcccatatgccgaccatgaatacacctgtgatgggaagctgcaagacagg
gaaatcaaatccctcctgtcccagcaggaataccagaggttcctagacctgaggctcaac
atcgcagagaaccgcagtgaaaacagttaccactgcaagacagcggactgccagggctgg
tgcatcttcgaggacgaggtgaacgagttcctgtgcccgctctgcaacaaacacaactgc
ctgctctgcaaggcgattcatgaaggaatgaactgtaaggagtaccaggatgacctccgg
atcagatcggagaatgacatcgctgccaggcagaccacggagatgctcaagaccctggtg
gagaatggggaggcgatgcactgtcccaggtgtaagatcatcgtgcagaagaaggacggc
tgtgactggatctgctgcgtcatgtgcaagacggagatctgctgggtgaccaggggcccg
cgctgggggccgaatggtcatggggatacctcaggagggtgtggctgcagattcaatgtg
gcacgctgtcaccccaactgccagaactgccactga
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