Polyodon spathula (Mississippi paddlefish): 121310863
Help
Entry
121310863 CDS
T07273
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121310863
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121310863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
U-box
Nis1
zf-RING_6
zf-RING_10
zf-RING_5
Prok-RING_4
DUF4661
BLYB
DivIC
Motif
Other DBs
NCBI-GeneID:
121310863
NCBI-ProteinID:
XP_041099731
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MASNLWSEDRFSCSVCLELLKDPVAIPCGHSYCMGCIKNCWDHTDHTGVYSCPQCRETFT
PRPDLRRNTMLAAVVEELKKTGLNPPPAQSYAGSGDVPCDACTGRKFKAVKSCLTCLASY
CETHVKPHYEGAAFKRHKLVNATGNLEQKLCAEHQKVLEVFCRTDQTFICLLCTQDKHKS
HDTVSAETERTGKQKQLGETQTEIQQRIQERLKEVEKLKQKRCGSLQWSSAQREMKESKK
IFTELIRSIEKIHTEVIELIGANEKAAVNQAEGRMKKLEHEIAELRRRNAELKQLSETED
HIHFLQNFQSLCAPPEAGDLPSVTVNTDISFGAVRKAVSELKDHIEDFCKGELVKITTTV
NEVAVYSLQAPEPRNRAEFLKYSCQLTLDPNTAHRELCLSEGNRKVTWRRETQRCPDHPE
RFDRLAQVLCREGLSGTRCYWEIEWSGGGASIGVTYKGISRKGRDHSCALGFNDKSWSLF
CSDSSYTAWHNNNKTAITAPLSPRVGVYLDFNAGTLSFYGVSDTMTLLHRFQTTFTEPLY
PGFGLLGSGSRVTICQLN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaacttgtggtcagaggatcggttcagctgttcagtgtgtctggagctattg
aaggacccagtcgctattccttgtggacacagttactgtatggggtgtattaagaactgc
tgggatcacactgatcatacaggtgtctacagctgcccccagtgcagagagacctttacc
ccaaggcctgatctgcgcagaaacaccatgctggctgcagttgtggaggaattaaagaag
acaggactcaatcctcctcctgctcagagttatgctggatctggagatgtgccgtgtgat
gcctgcactgggagaaagttcaaagctgtgaaatcctgtttgacgtgcctggcctcttac
tgtgaaacacacgtcaagccacactatgagggggctgctttcaagaggcacaagctggtc
aatgcaactggaaatctggagcagaagctttgtgctgaacaccaaaaggttttggaggtc
ttctgtagaaccgatcagacgtttatttgcttgttgtgtacacaagataaacacaagagc
cacgatacagtctcagctgagacagaaaggactgggaaacagaagcagctgggagagaca
cagacagaaatacaacagagaatccaggagagactgaaagaagtggagaagctgaaacag
aaacgttgtgggtcactccagtggagctctgcacaaagagaaatgaaggaaagtaagaag
atctttactgagctgatccgatccattgagaagatccacactgaggttattgagctgatt
ggagctaacgagaaggctgcagtgaatcaggctgaaggacgcatgaagaaactggagcat
gagattgctgagctaaggaggagaaacgctgagctgaaacagctttcagagacagaggat
cacatccattttctacagaatttccagtctctctgtgcccctcctgaagctggagactta
cccagcgttactgtcaatacagacatctcttttggggccgtgaggaaagctgtatctgaa
cttaaagaccatattgaggacttctgcaagggggaattagtcaaaataaccacaacagtg
aatgaagttgcagtttacagtctgcaggctccagagccaaggaacagagctgagtttttg
aaatattcctgtcagctcacactggaccccaacacagcgcatagagagctctgtctgtct
gaagggaacagaaaggtgacatggaggagagagacccagcgatgtcctgatcacccagag
agatttgacagactggcccaagtgctttgcagagagggtttgtctgggactcgctgttac
tgggagattgagtggagtgggggaggggcttctataggagtcacatataaaggaatcagc
aggaaaggaagggatcattcctgtgctcttggattcaatgacaagtcctggagtttgttc
tgctctgattccagttacactgcctggcacaataacaataaaactgcaataactgccccc
ctctcccccagagtaggagtgtatctggactttaatgccggcactctgtccttttatggc
gtctctgacacaatgaccctcctgcacagattccaaaccacattcactgagccgctctat
cctgggtttgggcttttgggttctggttccagagtaacaatctgccagctgaactag
DBGET
integrated database retrieval system
