Polyodon spathula (Mississippi paddlefish): 121316301
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Entry
121316301 CDS
T07273
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04137
Mitophagy - animal
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121316301 (prkn)
04120 Ubiquitin mediated proteolysis
121316301 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121316301 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121316301 (prkn)
04121 Ubiquitin system [BR:
pspa04121
]
121316301 (prkn)
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121316301 (prkn)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121316301 (prkn)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121316301 (prkn)
Aggrephagy
Other aggrephagy associated proteins
121316301 (prkn)
Xenophagy
Other xenophagy associated proteins
121316301 (prkn)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121316301 (prkn)
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121316301 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Ubiquitin_5
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
121316301
NCBI-ProteinID:
XP_041107232
LinkDB
All DBs
Position
5:74072708..74252207
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFSSSHGFPVDVDVGATILQLKEAVARQQGVPAHQLRVIFAGKELGNDSTLQSCD
LTHQSTVHVVMHSPRQNRRAAREMGAMSKGLQRGLLREVGSLTRVELSSSVLPTHSAGLA
AILEDELSSEPAQTDPADSSHRSSFYVFCKTVCKAVQPGKLRVRCKRCKQGTLTLSRGPS
CWKDVLIPNKIAGVCQSRDCDGNVADFFFKCGAHPTPDNDTSVALDLITPNYRNVPCLAC
TDVTSPVLVFQCLDRHVICLDCFHLYCVTRLNDRQFVHDPQIGYSLPCAAGCPDSLLKEL
HHFRILGEEQYDRYQLYGAEECVLQMGGVLCPRPGCGAGLLPEDGQRRLECEQRRGLGCG
FVFCRECKEEYHEGDCSATHRWERGVDMQGYVIVEEAARHARWEQASRDIILETTKPCPK
CHVPVERSGGCMHMVCPRAQCRFEWCWLCSVEWNRECMGDHWFG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtctttgtcagattcagctccagccatggcttcccagtagatgtggacgtgggt
gccaccatactccagctcaaggaggcggttgctaggcaacaaggggttccagctcaccag
ctgcgggtgatattcgcagggaaggagctcgggaatgactccacgctgcagagttgtgat
ctgacccatcagagcacggttcatgttgttatgcactcgccacggcaaaacaggagggcg
gccagagagatgggagccatgagcaagggcttgcagagagggctgctgagagaagtaggc
agtctgactcgggtagagctcagctcatctgttctgcccactcattcagcaggactggct
gccatactggaggatgagctcagcagtgagccagcgcagactgacccagcagattcaagc
caccgcagcagcttttatgtattctgtaagactgtttgcaaagcagtgcaacctgggaaa
ctcagggtacgatgcaagaggtgcaaacaagggacgctgacactgagcaggggcccttca
tgttggaaagatgtgcttattccaaataagatagctggtgtttgccagtctcgggactgt
gacgggaatgtggcggattttttctttaagtgtggagcccaccccacacctgacaacgat
acctcggtggcactggatctcattacccccaactacagaaacgtcccctgcttagcttgc
actgatgttacgagccctgtgttagtgttccagtgcttggaccgccatgtcatctgcctg
gactgtttccacctgtactgcgtgacaaggctgaatgaccggcagtttgttcatgaccct
cagattggatattctttgccatgtgcagctggctgtccagactctcttcttaaagagctt
catcatttccgaatcctcggagaggagcagtacgatcgctaccagctctatggggctgaa
gagtgtgtgcttcagatggggggtgtcctgtgccctaggcctggctgtggagctgggctg
ctccctgaagatggacagaggagattagagtgtgaacaaagacgtgggcttggatgtggg
tttgtgttctgccgtgagtgcaaggaggagtatcacgaaggggactgcagcgcaacccac
aggtgggagagaggtgttgacatgcaggggtatgttattgttgaggaagctgccaggcat
gccaggtgggagcaggcttcacgagacattattttggaaaccaccaagccctgcccgaag
tgccacgtcccagtggagagaagcggtggatgcatgcacatggtctgcccgcgagctcag
tgcaggtttgagtggtgctggctctgcagtgtcgaatggaaccgggaatgcatgggagat
cactggtttggctga
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