Polyodon spathula (Mississippi paddlefish): 121320949
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Entry
121320949 CDS
T07273
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121320949
03015 mRNA surveillance pathway
121320949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320949
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121320949
mRNA cycle factors
P-body specific factors
121320949
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
121320949
NCBI-ProteinID:
XP_041115718
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All DBs
Position
9:34376339..34394618
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AA seq
479 aa
AA seq
DB search
MRSEREVMTGDKERKTVEIHFRDQDSNPANIKHKEEKREVFTKVVIRRLPPNLSKEQLEE
QLNPLPAYDYFEFFSADQSLYPHLFSRAYINFKNPEDIVLFRDRFDGYVFIDHKGQEYPA
VVEFAPFQKVSKKKLKKKDTKSGSIEEDPEYKKFLESYCGDEEKATANPETLLGEIEAKT
RELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRMREEEKRKRREEERRKRK
ETEKQKKLAEKEIKIKLLKKPDKNDEQDLDKLNEKRDCGDIEKGKWDKNMKSKQLDTVTR
DQKEKVQTESDKEQREHGRRLREKDPDRPRCREDERKRPRHHYEFDKFVRRKEETKWGKG
YCHDRAKKDIHNSYSYCLDGDKLGKEDRGDDLKDCIHNKSVLVHQEKRTSHSEGRDVIGG
ALPAKDRPAMQLYQPGARSRTRLGSGGKSYDCSSKSPDRIVDRKFEAATGTGSEKSGDE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgagagggaggtgatgaccggggataaggaaagaaagacagtcgaaatacat
tttagagaccaagactcaaacccagccaacatcaagcacaaagaagagaaaagagaggtc
tttaccaaggtggttattcgacgcctacctcccaacctctcaaaggaacagcttgaggaa
caacttaatcctttgcctgcttatgactactttgagttcttctcagctgaccaaagcctt
tatccacatcttttctcaagagcatacatcaactttaaaaaccctgaagacatagttctc
ttcagagaccgctttgacggatatgtgtttatagatcacaagggacaggaatatcctgct
gttgtggaatttgcgccattccaaaaggtatccaaaaagaagctcaaaaagaaagatacc
aaatctggcagtattgaagaagatcctgaatacaaaaagtttttggagagttattgtggg
gatgaagagaaggccactgccaatcctgagacacttcttggagagatagaggcaaaaacc
agggaacttattgctaaaagaactacaccacttctggaatacataaaaaataagaaacta
gaaaagcagagaatcagggaggagaagcgagaagaaagaagacgaagggagctggagaaa
aaacgcatgagagaggaggagaagcggaaacgccgggaagaggaacggcgcaaaaggaag
gaaactgaaaaacagaagaagctagcagagaaagaaatcaagattaagctccttaaaaaa
cctgataagaatgatgagcaggacctagacaagctgaatgaaaagagagactgtggagac
attgaaaaggggaagtgggataaaaacatgaaatcaaaacagttagacactgtaaccaga
gaccaaaaggagaaagtgcagacagagagtgacaaagagcagcgagagcatgggaggcgg
ttaagagagaaggatcccgacaggccgagatgccgtgaagatgagcgcaagagaccgaga
caccactacgagtttgacaagttcgtgagacgaaaggaagagaccaagtgggggaaggga
tactgccacgacagggctaagaaagacatccataacagttattcatattgtctggatggt
gacaaactgggaaaagaagacaggggtgatgatctaaaagactgcatccacaacaagtct
gtgttagtgcatcaagagaaaaggacctcccattcagagggtcgtgacgtgataggaggg
gctctgccagcgaaggaccgtccggcaatgcagctctaccagcccggagcccgcagcaga
acacgcctgggatctggtggaaaatcttacgactgctccagcaagtctccagatcgcatt
gtcgacaggaagtttgaagcagctacaggaactggatcagagaagagtggggacgagtag
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