Polyodon spathula (Mississippi paddlefish): 121325664
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Entry
121325664 CDS
T07273
Symbol
cylda
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04217
Necroptosis
pspa04622
RIG-I-like receptor signaling pathway
pspa04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121325664 (cylda)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121325664 (cylda)
04625 C-type lectin receptor signaling pathway
121325664 (cylda)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121325664 (cylda)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121325664 (cylda)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121325664 (cylda)
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C67
121325664 (cylda)
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121325664 (cylda)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CYLD_phos_site
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
121325664
NCBI-ProteinID:
XP_041124443
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All DBs
Position
13:complement(44035878..44058928)
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AA seq
961 aa
AA seq
DB search
MSSALWSQDKMNTAFREDPRYYILVQECVVEKPPQKYLKIPRGSIGQSCQERSSMGRPIP
ANKGKKSLWILEQPSVVLSFDEKDIADIDEKLSELLLAITNCEERYCLFKNKRRLEQLRE
IDCGSKVRVQLRSGDDKLPGVVRFKGPLMPERTLSGIWFGVELLEEGRGCGFTEGSYQGK
QLFRCEDECGVFVALDKLELWEEEEEEEEEGEENEEDEEDEDLETDHSALVDPRDSDWRA
VPLEINSRVIVKHGEEAEHGTVIFCDLLPGNEALGFYVGVDMDKPIGDWDGVINNKLLCS
FASVEHTCLVHIDDVMPEFPMQDQRLQKHIFASRGVGEKSLSNQSKPKSKGITSQSGSRS
RSAFYYTLNGSTIDHQPQSKSKSTWYIDEVGEDPAKSLLDTSPGFGQTSSPSRPPPTLSL
SGESKFHSLPFNLTSKSGPNGSISPTPLSLSVQSVIGDAHEAPALAVPLRNQYGLEVGSL
AEVKENPPLYGVIRWVGQPPGLTEPLAGLELEDECAGCTDGTFKGMRYFTCAPKKALFVK
LKSCRPDSRFPSPHHSSNQIERCNSIAFGGYLSEVVEQNTPPKMDMEGLEVMVGKKKGIQ
GHYNSCYLDSTLFCLFSFSSVLDTVLLRPRGKSDVEYYRETQDLLRTEIVNPLRIFGYVC
ATKIMKLRRILEKVEAASGFTSEEKDPEEFLNILFHHILRVDPLLKVRSMGQKVQDCYFY
QIFMDKNEKVGVPTSQQLLEWSFINSDLKFAEAPSCLIIQMPRFGKDFKMFNKIFPSLEV
DITDLLEDTPRECRICGGLALYECRECYEDADIAAGKIKQFCEKCNTQVHLHPRRKGHQL
GKLSLPKELADCAWRQGRFPRQRMELFAVLCIETSHYVAFVKYGPGESAWLFFDSMADRD
GGQNGFNIPQVTPCPEVGAYLKMTPEELHALDPKSIQGFARRLLCDAYMYMYQSPTMSLY
K
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgagttcggccttatggagtcaagacaagatgaacacagccttccgggaggatcctcgc
tactacatactggtgcaggaatgcgtggtggagaagcctcctcagaagtacttgaagatc
cccaggggaagcatcggacagtcgtgccaagagcgttcatccatgggccgccccattcca
gccaacaaaggcaagaagagtttgtggatcctggagcagcccagcgtggtcctcagcttc
gatgagaaggacattgctgacatcgatgagaagctttctgagttgctgttagcgattacg
aactgtgaagagcgctactgcctcttcaagaacaagcgcaggcttgaacagctacgggaa
atagactgtggttcaaaagtcagagttcagctccggtctggggatgacaaactgccaggg
gtggtgaggttcaaagggcctctgatgccagaacggacactatcaggaatctggtttggg
gtagagttattggaagaagggaggggctgcggcttcaccgagggctcttaccaaggcaag
cagctcttccgctgcgaggatgagtgtggggtttttgtggccctggacaagctggagctg
tgggaggaggaagaagaagaggaggaggagggggaggagaatgaagaagatgaagaagat
gaagacctggagacagaccattctgcattggtggacccccgagacagtgactggagagca
gtgccactggagataaactccagagtgatagtgaagcacggagaggaagcggagcacggg
actgtcatattctgtgatcttctgcccggaaatgaagctttaggcttctatgttggagtg
gacatggacaagcctatcggtgactgggatggagtgataaataacaaactgctgtgtagt
ttcgcaagcgtagaacacacttgccttgtgcatattgatgatgtgatgccagagttcccc
atgcaggaccagagactccagaaacacatctttgcatcaagaggggtaggagagaagagc
ttgtccaatcagagcaagcccaaatctaaaggaattacttcccagtctggaagtagaagc
agatctgcattttattacactttaaatggcagcactattgatcaccagccccaatccaaa
tcaaaaagcacatggtacattgatgaagttggagaagatcctgccaagtccctcctggac
acctcccctgggttcggccagacctcttctccctcccggcctccccccactctgtcgctg
tctggcgagagcaagttccactcactgcccttcaacctgaccagcaagagcggccccaac
ggcagcatcagccccacgccgctctccttgtccgtgcagtctgtcataggggacgcccac
gaggccccagccctcgcagtgccactccgcaaccagtacggcctggaggtggggtccctg
gcggaggtgaaggagaacccacctctctacggagtgatccgctgggtggggcagccccct
gggctcactgagccattagctggactggaactggaggacgaatgtgctggctgtacagac
ggcaccttcaagggcatgcgctacttcacctgtgcaccgaagaaagctctgttcgtcaaa
ctgaagagctgcaggccagattccagattcccgtctccgcaccactcctccaaccagatt
gagcgctgcaattcaatagcatttgggggctacctgagtgaggtggtggagcagaacacc
cctcccaaaatggacatggaggggctggaggtcatggtggggaagaagaaaggaatccag
ggacattataactcctgttaccttgactccactttattctgcctgttttccttcagctcg
gtcctcgacacagtgctgctgagaccgaggggtaaaagtgacgtggagtactatagagag
actcaggatctgctgcggaccgagattgtgaaccctctgcgcatatttggatacgtgtgc
gctacgaaaataatgaaacttaggagaatacttgagaaagtggaagccgcttctggattc
acctccgaggagaaagatccagaagaatttctgaacatactcttccatcatattttacga
gtggatccattgctgaaagttcggtcaatggggcagaaagttcaagactgttacttttac
caaatcttcatggataaaaatgaaaaggttggcgtcccaactagccagcaattgctggaa
tggtccttcattaacagtgacttgaagtttgccgaggctccatcatgccttattatccag
atgcctcggtttggaaaagacttcaagatgttcaacaaaatctttccttctctggaagtg
gacatcactgatttactcgaagacactcccagggagtgccgaatctgcggtggactggcc
ctctacgaatgcagggagtgctacgaagatgcagacatcgctgctgggaaaatcaagcag
ttctgtgaaaagtgcaacacacaagtgcatctccacccccggagaaaagggcaccagttg
ggcaagctgtccctcccgaaagagctggcggactgtgcctggcggcagggcagattcccc
aggcagaggatggagctcttcgcggtgctttgtatagagaccagtcactatgtggcgttc
gtcaagtacggcccgggggaatcggcctggctcttcttcgacagcatggcagaccgggac
ggaggacagaatggcttcaatatcccccaggtcacgccctgtccagaggtcggcgcatac
ctcaagatgacccctgaagagctccacgcgctggaccccaagagtattcaaggcttcgca
cggagactgctgtgtgacgcgtacatgtacatgtatcagagtccaaccatgagtttatac
aagtga
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