Polyodon spathula (Mississippi paddlefish): 121328605
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Entry
121328605 CDS
T07273
Name
(RefSeq) rootletin-like isoform X1
KO
K16469
rootletin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121328605
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121328605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rootletin
Motif
Other DBs
NCBI-GeneID:
121328605
NCBI-ProteinID:
XP_041129364
LinkDB
All DBs
Position
16:14914421..14950299
Genome browser
AA seq
2100 aa
AA seq
DB search
MSASGDLKSKIGGELKLEAVIQRLEESVLSSADEKSFTLRGDTHDSPPTPLPARIREIVT
KNLTEDTPVAMASVISLQEENRILQQELSRVEDLLAQSRAERDELAIKYNAISERMEVMS
PLALLSSELGHRKLKLEESLRLKGKDAVTNADLEQPISWQCGDVGAEGAELRPRSPPLEQ
TLRVETGEQDRESLESRSLTQQNMELRRRLDEEQAAYKRKLQAYQEGQQRQAQLVQKLQA
KVLQYKKKCGELEQVVLDKSTELEQHRMTSRLDSSTGRLRPEEEEHSNDLENALIRLEEE
QQRSASLAQVNAMLREQLDQANSANQALSEDIRKLTADWTKAREELEQREVDWRREEESF
HTYFSSEHSRLLALWRQVVGFRRHICELKSATERDLAEVRNELAKASRSAHASCLNLGAN
LRASESSSTLALDKQSAQRAQLEEQLRDKVRDMLQMQARCDTEKAELNARITELMVEVER
MKTQGEEKEKASTSVTQRLEALEGSLSQEQAEREQEEVEALRAEIETLQQALRDITQAVL
ADSDTGVPVPPLEGEQDLMGSLGGVSVLHSPSPRRGASPRRSASPRRSFSTSLADPTLGA
VRAALTNRQIHLQELRGRYEGAQDLVASLRRQLAESETERRALEQRAQQLSEEREEAGRA
KDAAQRDADRLRSCTEHIGSEKASLGKALQALQERVETLQQEGERLQLANAALQRERDCE
SEEKEGALKERERARAETEKGQKQLEQVEARCSALRKELALMKEALQRQMLDKEVLETEK
AGLAEALSRAETSVAELTLACNRLRAEESTLRDSLAKMSSLNEGLAQDKIQLNKIIIQLE
DEKGSLIGQKREVEQEKASIRDELVRLEQEKLDLDSARHGLDQSLQDVEQSQEVLEERLR
ALQGQRAELQEQLAQVSRQRSSLLEDLSQARREVERQGEGLVRAAREKEELTREKASLVV
QLTASERENRGLAEEVAAFRSEREALETSLFEVQQQLVQRESRSEQLEAEHQALLRAKEA
LQAELKRVRAEAEVGLVKLERDKELLVQKQSQIEQEAQVTLRSALTAQQEETDRLTHDKE
ALRLTLEAQRDEILHTLTREREEMVSRYEAEKEELNKEITELQQERDQSLLIAESEKQQA
LSLKESEKTVLSEKLTSLQHELGSTNMELERVRREAQSRQEQERNTVRMLTTELREFRTQ
FEDAVTAHEREVKSLHEQNKEVGRQREKVLRELEEARTAVRLGEEARDGVRRELLEAQRR
LREAQDAQESQRKDILDLRRSLGDQDKERDTLHASNTELREAVKRAESERISLKRLNEEK
EQKLAVLEESRAASEREAAELRAGLREVEKSRLEARRELQELRRQVKLLDSEKEQKSREV
AELQARVSLDEQREGDTRRESFGLKQRIMETEAVRDSARKEVSSLQRRMTELEAECRLRE
RELAARLEEARGNEKKLQDNTRNLELRAEQARGELTEMGLALSEAQGRISGLEAELTRLD
GHKRELEFKLGSLHSALSRTLGIGGRGRGNSPALRGRSHSPRRSLSPLKGMDESRRSPMA
RMETPDRGPASRPISPDRTDTPFPELDPETVRSALREFLQELRDTQRERDEARTQSGTLA
RQLGEMEADRDGTQQRLQQLQKSLAECEEGKRGADGRLSSAQTALMLQEELIRRSERERK
ALLDKVATLERSLQGAESERRGMQDKINKLKAGEARLEAERRRLKEALEAAESRGTKLEL
ARRALEGELQRMKLGLGDKETEMQAAQDRIDTLQRQVSDSEMKASTLKLELDRLHLALAR
AEESEGALKERLQSLAQCVAESNASQADAQDRLLTLQKSLTASEQERRLLQERLESARSA
VLEGKKNAGVLSERMQTLQSELGEMELKRGELEGQLQQHQELLRQRMESEEAALRSLEKL
QGERALAQERLRSLQRAVAQLESEKREAERAAGRLEKDKAALRNTLDKVEREKLKMEEGS
MRLSAEKGRLDRSLSSVEQELVDSQRQIQMLQAQLGEMEQAQSQGLTEVSLRLKQEMQQE
TERLRGAQLQAERTLEARERAHRQRVKGLEEQVSTLKEQLQQELRRRQPHFSHSSILSGN
NT seq
6303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctctggagatctgaagtcgaaaatcggaggagagttgaaactagaagccgtt
attcagaggctggaggagagtgtgctgtcatcagcagacgagaagagcttcactctgcga
ggcgacacccacgactccccgcccaccccgctgcctgcgcgaatcagagagattgtcacc
aagaacctgactgaggacactccagtagccatggcctccgtgatctctctccaggaggag
aacaggatcctccagcaggagctgtcccgggtcgaggacttgctggctcagagccgtgcc
gagcgcgatgaactggctatcaaatacaacgccatcagtgagcgaatggaagtcatgtct
ccattggctctccttagtagtgagctgggacacaggaaactcaagttggaagagtctttg
cgtctgaaggggaaggatgctgtgacaaacgcagatctggaacagccaatcagctggcag
tgtggagatgttggtgctgagggggcggagctaaggccacgtagtcctccgttggagcag
accctgcgcgtggagactggcgagcaagaccgggagtccctggagagccggagcttgact
cagcagaacatggagctgcggagaaggctggacgaggagcaggctgcctacaagcgcaag
ctgcaggcttatcaggaggggcagcagaggcaggcccagctcgtacagaaactgcaggcc
aaggtgctgcagtacaagaagaagtgtggagagctggagcaggttgtgctggacaaatca
actgagctggagcagcaccgcatgactagtcgcctggactcctccactggccgtcttcgt
cctgaagaggaggagcatagcaacgacctggagaatgcactcatccgattggaggaggag
cagcagaggagtgccagcctcgcccaggtgaatgccatgctgcgggagcagcttgatcag
gccaactcagccaatcaggcactgagcgaggacatccgcaaactcactgctgattggacg
aaggcccgcgaggaactggagcagagggaggttgattggaggagagaggaggagtccttc
cacacttacttcagcagtgagcacagccgcttgctagccctgtggagacaggtggtgggc
ttccggcggcacatctgtgagctcaagagcgccacagagagggacctcgcggaagtgcgg
aacgagctagccaaggcctcccgcagcgcccacgcctcctgtctcaacctgggtgccaac
ctgcgagccagcgagagctcctccaccctggcgctggacaagcagagcgcccagcgggca
cagctggaggagcagctgcgtgacaaggtgcgagacatgctccagatgcaggccagatgt
gacacggagaaagcagagctcaacgccaggattacagagctgatggtggaggtggagagg
atgaagacccagggggaggagaaggagaaagccagcacatctgtcactcaaagactggaa
gccctggagggcagtctctcccaggaacaggctgagcgagagcaggaggaggtggaggca
ctgagagctgagattgagacactgcagcaggctctccgtgacatcacacaggctgtgctg
gcggactctgacacgggggtccctgtgccccccctcgagggagagcaggacctgatgggc
tctctgggtggggtctcagtcctgcacagcccctcccctcgccggggggcttctcctcgc
aggtctgcctcccctcgacgcagcttctccaccagccttgctgaccccacgctgggggcc
gttcgagccgccctaaccaacagacagatccacttacaggagctgcgagggcgctatgag
ggggcccaggatttggtggcatctctgcgacggcagctggccgaaagcgagacggagcgg
cgggcactcgagcagcgggcacagcagctgagcgaggagagagaggaggctgggcgagcc
aaggacgccgcgcagagagacgctgacagacttcgctcctgcactgaacacattggcagt
gagaaagccagccttgggaaggcgctgcaggccctgcaggagagagtggagacgctgcag
caggaaggcgagaggctgcagctcgccaatgcagcgctgcagagagaaagggactgcgag
agcgaggagaaagagggggctctgaaagagagggagcgagccagggcagagactgagaag
gggcagaagcaattggagcaggtcgaggctcgctgctcagccctcaggaaggagctggcc
ctgatgaaggaggctctacagagacagatgctggacaaggaggtgctggagacagagaag
gctgggctggctgaggctctgtccagggcagagaccagcgttgctgagctgactctggcc
tgcaacaggctccgggccgaggagtcgaccctgcgggactccctggctaagatgagctcc
ctgaacgaggggctggcccaggacaagatccagcttaacaagatcatcatccagctagag
gatgagaagggctctctaataggtcagaagagggaggtggagcaggagaaggcctcgatc
cgagacgagctcgtccgattggagcaggagaagctagacctggactccgcccgccatggc
ctggaccagtcgctgcaggacgtggagcagagccaggaggtgctggaggagaggctgcgg
gcactgcaggggcagcgggctgagctacaggaacagctggcacaggtctcgcgccagcgc
tcctccctgctggaggacctgtcccaggctcggcgggaggtggagcgccagggggagggg
ctggttcgagcggcccgagagaaagaggagctgaccagagaaaaggccagcctggtggtg
cagctgaccgcgtccgagcgggagaaccgtggcctggccgaagaggtggccgcattcagg
tcggagagggaggctctggagaccagcctcttcgaggtgcagcagcagctggttcagcgg
gaatcccggagcgagcagctggaggcagagcaccaggccttgctgcgggccaaggaggcc
ctgcaagccgagttgaagcgagtgcgggcagaggctgaggtcggactggtcaagctggag
cgagacaaggagctgctggtgcagaagcagagccagatcgagcaggaggcccaggtcaca
ctgcgatcagctctgaccgctcagcaagaggagactgaccgcctcacccacgacaaggag
gctctgaggctcacgctggaggcacagcgggacgagattctgcacaccctgactcgagag
cgtgaggagatggtgtctcgctacgaggctgagaaagaggagctcaacaaggagatcacg
gaactgcagcaagagagggaccagagcctgctgatagcggagagtgagaagcaacaggcc
ctgtccctgaaggagtcagagaagacagtcctctcggagaaactgaccagcctccagcac
gagctgggttccaccaacatggagctggagagggtccgacgggaagcacagagcaggcag
gaacaggagcggaacactgtgagaatgctgacgactgaactgagggagtttcggacccag
ttcgaggatgcggtgacagctcacgagagggaagtgaagagcctgcatgagcagaacaag
gaggtggggaggcagagggagaaggtgctcagagagctggaggaggcccgcacagcggtg
cgcctgggagaggaggcacgggacggggtgcggagggagctgctggaggctcagcgcagg
ttgcgagaggcacaggatgcccaggagagccagcgcaaagacatccttgatctgcgacgc
agcctgggggaccaggacaaggagagagacaccctgcatgcctccaacactgagctaaga
gaggctgtgaagagagcagagagcgaaaggatcagtttgaagaggctgaacgaggagaag
gagcagaagcttgccgtgctggaggagagccgagccgcatcggagcgagaggccgcggag
ctgagggcggggcttcgcgaggtcgagaagtcacggctagaggcccgcagagagttacag
gagctccggcgccaggtgaagctcctggacagtgagaaggagcagaagagccgggaggtg
gctgaactgcaggcccgggtctctctggatgagcagagggagggggacacacgcagggaa
tccttcggactcaagcaaaggatcatggagactgaggctgtccgggacagtgcgcgcaag
gaggtttccagcctccagcgcaggatgacggagttggaggcggagtgccggctgcgcgag
agggagctggcagcccggctggaggaagcgcgaggcaatgagaagaagctgcaggacaac
acacgcaacctggagctgcgggccgaacaggcgcggggggagctgacggagatggggctg
gcgctgagcgaggcacaggggcgcatctccggcctggaggcggagctgacacgactcgat
gggcacaagagagagctggagttcaaactgggcagcctgcactccgccctgagccgcacc
ctgggcattggggggcggggccgcggcaacagccccgccctccgcggacgcagtcactcc
cctcggcgctcactttcgccacttaaaggtatggatgagagcaggaggagccccatggct
cggatggagaccccagatagaggtcccgcctccagacccatctcccctgaccgcacggac
acgcccttcccagaactggaccctgagacagtccggagtgcgctcagagagttcctgcag
gagctgagagacacgcagagagagcgggacgaggcccgcacacagtctgggaccctcgct
cgacagctcggggagatggaagcagatcgagatgggacccagcagaggctgcagcagctg
cagaaatccttggctgagtgcgaggaagggaagcggggtgcggacggccggctcagctct
gctcagaccgctcttatgctgcaggaggagctgattcggcgcagtgagcgtgaacgcaag
gctctgctggacaaggtggccacgctggagaggagtttgcagggagcagagagcgagcgc
cgtggcatgcaggataagatcaacaagctgaaggccggcgaggcgaggctggaggcagag
aggaggaggctgaaggaagctctggaggcagcagagagcagaggcaccaagctggagctg
gctaggcgcgctctggagggggagctgcagagaatgaagctggggctgggggacaaggag
accgagatgcaggcggcgcaggaccgcatagacactctgcagagacaggtgtcggacagc
gagatgaaggccagcaccctgaagctggagctagatcggctgcacctggccctggcgcgg
gcagaggagagtgagggcgcattgaaggagcgtctccagagcctggcgcagtgtgtggca
gagagcaacgccagccaggccgatgcccaggaccgcttgctcaccctgcagaagagcctg
actgccagtgagcaggagcgtcgcctcctgcaggagaggttggagagcgcacggtcggct
gtcttggaagggaagaagaatgccggggtgctgagtgagcgtatgcagaccctacagagc
gagctgggggagatggagctgaagaggggagagctggaggggcaactgcagcaacaccag
gagctgttgcgtcagcgcatggagtcagaagaggctgcgctgagaagcctggagaagctg
cagggagagcgggctctggcgcaggaaaggctgaggagtctgcagagggccgtagcccag
ctagagagcgagaagagggaggcggagagggccgcaggcaggctggagaaggacaaggca
gctctccgaaacacacttgacaaggttgaacgtgagaagctgaagatggaggaggggagc
atgcgtctgtcagcggagaaggggcgactggaccgctctctgagctctgtggagcaggaa
ctggtggactcccagagacagatccagatgctgcaggcgcagcttggtgagatggagcag
gcacaatcccagggcctcacggaggtgtctctgagactcaagcaggagatgcagcaggag
acggagcggctccggggagctcagctgcaggccgagaggactctggaggcgagagagaga
gcccaccgacagcgtgtgaaggggctggaggagcaggtctccacactgaaggagcagctg
cagcaggagcttcgccggcgccagcctcacttctcccactcctccatcctgtctggaaac
tga
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