Polyodon spathula (Mississippi paddlefish): 121329164
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Entry
121329164 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM62-like
KO
K12030
tripartite motif-containing protein 62 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121329164
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121329164
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121329164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
CorA
zf-B_box
zf-RING_2
zf-RING_6
zf-RING_10
U-box
zf-RING_5
Fis1_TPR_N
Phasin
SHE3
DUF1359
Fib_alpha
Vps39_1
DUF6872
NPV_P10
ApoLp-III
OmpH
DUF4795
Spore_III_AB
Spc24
Motif
Other DBs
NCBI-GeneID:
121329164
NCBI-ProteinID:
XP_041130502
LinkDB
All DBs
Position
16:complement(2468221..2509593)
Genome browser
AA seq
484 aa
AA seq
DB search
MFRVPQHLQMACCLKDELLCSICLSIYQDPVSFGCEHYFCRKCITEHWSRQQQHSARDCP
ECRRTFADPQLSPSLKLSNIVERYTAFPLDAILNAQRNSYPCKDHEKVKLFCLSDKNLVC
FFCDEPALHEQHHVTSIDEAFEEIQREMKEQLVALQDSEGGHMEALQLLQRQLTETKSSA
NSLRATLADAFERLHRFLRERQKSMLEELETDTARTLSDIEDKIQRYSQQLHDVKEGIQI
LQELLSESDQHGFLQGVALTSERIKGKIHETNLTYEDFPTSKYMGPLQYTIWKSLFQDIS
PVPAGLTLDPITAHQRLILSDDCTIVAYGNLHPQPLQDSPRRFDVEVSVLGSQGFDSGVH
YWEVTVCEKTQWMIGLAHEAVSHKGSIQIQPARGFYCIVMHDGNQYSACTEPWTRLNVKT
KLEKVGVYLDHPKGLLVFYNADDMSWLYTYREKFSGKLYPYFSPGQSHANGKNVQPLRIN
TVRL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgggtcccccagcatttgcaaatggcttgttgtctgaaggatgagttgctgtgt
tccatctgcttgagcatctaccaggaccccgtgagtttcggctgtgagcattacttctgt
aggaagtgcatcacggagcactggagccgacaacagcagcacagcgccagagactgtccg
gagtgccgcaggacctttgcggacccgcagctctccccaagcctcaagctctccaacatc
gtggagaggtatactgctttcccgctggacgccatcctcaacgcccagcggaactcgtac
ccgtgtaaggaccatgagaaggtcaagctcttctgccttagcgacaagaaccttgtttgc
ttcttctgcgacgagccagctctgcacgaacagcaccacgtgaccagcatcgacgaggcg
tttgaggaaatccagagggagatgaaggagcagctagtggccctgcaggacagcgagggg
ggacacatggaggccctgcagctgctgcagagacagctcactgagaccaagtcatctgca
aacagcctgcgcgccacgctggccgatgcattcgagcgactgcatcggttcctgcgcgag
cggcagaagtccatgctggaggagctggagacagacacggcacgcacgctcagcgacatc
gaggacaagatccagcgctacagccagcagctgcacgacgtcaaggaggggatccagatc
ctgcaggagctcctgagcgagagcgaccagcatggcttcctgcagggggtagccctgacc
tctgaaagaattaaagggaagatccatgaaactaacctgacgtatgaagatttccccaca
tccaaatacatgggacccctgcagtacacaatctggaaatcccttttccaggacatctcg
ccagtgccggcggggctgacgctggacccaatcacagctcaccagcgcctcatcctgtct
gacgactgcaccatcgtggcgtacgggaacctgcaccctcagccgctgcaggactcccca
cgccgcttcgatgtggaggtgtccgtgctgggctcccagggcttcgactcgggtgtgcac
tactgggaggtgacggtgtgtgagaagacacagtggatgatcggcctggcccacgaggcg
gtgagccacaagggcagcatccagatccagccggcccgcggcttctactgcatcgtcatg
catgacgggaaccagtacagcgcctgcacggagccctggacacgcctcaacgtcaagacc
aagctggagaaggtgggcgtctacctggaccaccccaagggtctgctggtcttctacaat
gccgacgacatgtcctggctctacacctaccgggagaagttcagtggcaagctgtaccct
tacttcagtcccgggcagagccacgcaaacggcaagaacgtccagcccctgcgtatcaac
accgtcagactatag
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