Polyodon spathula (Mississippi paddlefish): 121329737
Help
Entry
121329737 CDS
T07273
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47-like isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121329737
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121329737
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121329737
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121329737
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121329737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
MCM4_WHD
Dockerin_1
Motif
Other DBs
NCBI-GeneID:
121329737
NCBI-ProteinID:
XP_041131405
LinkDB
All DBs
Position
17:5215830..5235254
Genome browser
AA seq
1365 aa
AA seq
DB search
MEMVPSEENRLVPKEGMFWSCRQSIFDEMKKKLSQIESAADEPRVLCIVQDTTNVKTVNE
RLTLNLPASTSLRKLFEDVASKAGYVNNTFDLVWGSPTDLAPLDHSSDKPLSESGFEAGK
KNFLHLTDKDGEQPQIASDESGTADSSGLDDSSRDRFVGPLPRDGTVGCSSDYSSQSYSY
SSILSKSETGYVGLVNQAMTCYLNSLLQTLYMTPEFRNALYNWEFEESEEDQVTSIPYQL
QRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWSLTEQADL
INQLYQGKLKDYVRCLECGYESWRIDTYLDIPLVIRPYGSSQAFGSVEEALQAFIQPETL
DGPNQYFCERCKKKCDARKGLRFLHVPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELD
MSPFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSTDDGVDEGICLENSSAVLKSK
SSLIYELFSVMVHSGSAAGGHYYACIKSFSDGQWYSFNDQHVSKITQDDIRKTYGGASGS
RGYYSSAFASSTNAYMLIYRLKDPARNAKYLDVQEFPEHIKYLVQKEKAMEEQEKRQREI
ERNTCKIKLFCMHPVKMIMMENKLEVHRDKTLKEAVEMAYKLVDLDGIVPLDCCRLVKYD
EFHEYLERSYEGEEETPMGLLLGGVKSSYMFDLLLETRRPEQVFQLYKPGEVMVKVHVVD
LKTETIGLPVTVRAYLNQTVTEFTQLLSQATGLSADTMRIVLERCYNDLRLLYVPNKTLK
AEGFFRSNKVFIESSDSTDHQVTFTDSHLWKLLDRHGNTIRLYVSLPAQSQLNRTLSQKA
GGDSCSMEDTFEREKGNRKTVEAILEESTEKLKNLSLQQQGGNGENVKSTEACDFENIES
PSQEADSTSLDNRELENRILTSDPESNLQSEERSDSDLNNDRSTSSVDSDILSSSHSSDT
LCNADSAPIPLANGLDSHSITCSRRSKANEGKKETWDTAEEDSGTDSEYDENGKSKGETQ
YAYFRAEPYTSDDGSGEGQKCLLVHLDKRITLAAFKQNLESFVGVPSSQFKVFRIYANNQ
EFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNDPEPCRFLIDSVFAKGM
TVRQSKEELLLPLKEQCKLNLSIDRFRLRKKTWKNPGTVFLDYHVYEEDINISSNWEVFL
EVLDDPEKMKSMSQLAVLTRRWSPSQMKLEPFQEVVLESSSVDELKQKLSEISGIPVENT
EFAKGRGTFPCDISILEIHQDLDWNPKVSTLNAWPLYICDDGAVVFYRDKTEELMDLSDE
DRNELMKKESSRLLKTGHRVNYSPRKEKALKIYLDGAPSKDSSQD
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggttcccagcgaagaaaatcgcctcgtacccaaagagggtatgttttggagt
tgcagacaaagtatttttgatgaaatgaagaagaaactctctcagattgaaagtgctgca
gatgaacctcgcgtgctgtgtatcgttcaggacaccacgaatgtgaagaccgttaatgag
agacttaccttaaacctccctgcttcaacctccctcagaaagctctttgaggatgtcgcc
tccaaggctggctatgtaaataacacttttgatttggtgtggggcagcccaacagacctg
gctcccctggatcatagcagtgacaaacctctgtcagagtctggctttgaagcagggaag
aaaaactttctacatctgaccgataaagatggtgaacagcctcaaatagcatcagatgag
tcgggtacagcggacagcagcggccttgatgacagctctcgggacagattcgtcggtcct
cttcctagggatggtacagtcggctgcagcagcgactacagcagccagagctactcctac
tcctctatcctcagcaaatctgaaacgggatatgttggtttggtaaaccaagccatgacc
tgctacctaaacagcttgctgcagaccctctatatgactcctgagttcagaaatgctctg
tacaactgggagtttgaggagtctgaagaagaccaagttaccagcatcccataccagctc
cagcggctctttgttttgttgcaaaccagtaagaaaagagccatcgaaacaacagatgtg
acccgcagctttggctgggacagcagtgaagcttggcaacagcatgatgtccaggagtta
tgcagagtcatgtttgatgcgctggagcaaaagtggagtctgacagagcaggctgacctt
attaatcagctgtatcagggcaagttgaaggattatgtacggtgtctggagtgtggatac
gagagctggaggatcgacacttatctcgatatcccgctggtcatccgaccctatggttcc
agccaagcgtttggcagtgtggaagaagcacttcaagcattcatccagccagagactctg
gatggccccaatcaatacttctgtgagcgctgtaaaaagaaatgtgatgcacgcaagggc
ctgaggttcctgcatgttccatacctgttgacactccagttgaagcggtttgactttgac
tataccaccatgcatcggattaagctgaacgatcgtatgacttttcctgaagagctggat
atgagtccttttattgatgtggaagatgagaaatcgcctcaaactgagagttgcacagac
agtggagctgaaaacgaagggagctgtcacagcgatcagatgagcaatgatttctccact
gatgatggagttgatgaaggaatttgtctggagaacagcagtgcagttttaaaatctaag
agctcgttaatatatgagctcttctcagtcatggtccactctggaagtgctgctggggga
cactactacgcttgcatcaaatcgttcagcgatggccagtggtacagttttaatgatcag
cacgttagcaagattacccaagatgacatcaggaaaacttatggtggagcttcaggaagc
agaggctattactccagtgcctttgctagctctacaaatgcatacatgctgatttatagg
cttaaggatcctgcaaggaatgcaaagtatttggatgttcaagaatttccagagcatata
aagtatcttgttcaaaaagagaaggcgatggaagagcaggaaaagaggcaacgcgaaatt
gaacgcaacacctgcaagattaaactgttttgcatgcaccctgtgaagatgatcatgatg
gaaaacaaacttgaggtccatagagataaaacactaaaggaagctgtggaaatggcgtat
aagttagtggatctggatgggattgttccactggactgctgtcgacttgttaaatatgat
gagtttcatgagtacctggagagatcctatgaaggagaggaggagaccccaatgggattg
ctgttaggtggagtgaagtcatcctatatgtttgacttgctgttagaaacaagacgacca
gaacaggtcttccaactgtacaaaccaggagaagtaatggtgaaagtgcatgttgttgac
ctgaaaacagagaccattggccttcctgtcactgttagagcttacttgaaccagacggtc
acagagttcacccagctcctttcacaggcaacagggctttctgctgacacgatgcgcatt
gtgctggagcgttgctataatgatctaagactgctctatgtgcccaataagacactgaag
gcagagggatttttcagaagcaacaaggtgttcattgaaagctctgattcaacagatcac
caggttacgtttacggattctcatttatggaagcttcttgatcgccatggaaacactatt
aggttgtatgtttctttacctgcacaatcccagcttaacaggaccctttcccaaaaagct
ggtggcgattcttgcagtatggaggacacctttgaaagggagaagggtaacagaaagact
gtggaagcaattttggaagaaagcactgaaaaactcaagaatttgtcactccagcaacag
ggaggaaacggcgaaaacgtcaagagcacagaggcatgtgactttgagaatatcgagtcc
ccttcccaggaggctgactctacctcattagacaacagagagctggagaaccggattctg
acctccgatcctgaaagcaacttgcagtcagaggagcgctcggactctgacttaaataat
gaccgcagcactagctcagtggatagtgatatcctcagctccagtcatagtagtgacaca
ttgtgcaatgctgacagtgcccccatccctttagctaacgggctggattctcacagcatc
acgtgcagtcggcggtcaaaagcaaatgagggcaaaaaggaaacgtgggataccgcagag
gaggattctgggacagacagtgaatatgacgagaatgggaagagcaaaggagagacccag
tacgcttatttcagggcagagccatacacttcagatgacggttcaggagaaggacaaaaa
tgtttgttggtccatcttgataaacggattacgctggctgcctttaaacaaaacctggag
tcctttgttggagttccatcctcccagtttaaggtcttcaggatctacgccaacaaccag
gagtttgaaagtgttaggctaaacgagactctgtcctcgttttcagatgataacaagata
acaatacgattaggaagagcactaaaaaagggggagtatcgtgtcaaagtttaccagctt
ctagtaaatgatccagagccctgcaggtttttgatagattcagtgtttgcaaaaggaatg
actgtgcggcagtccaaagaagagcttttgcttcctctgaaggagcagtgtaagctgaat
ctcagcattgacagatttcgactacgaaagaagacttggaaaaatcctggaacagtattt
ctggactatcatgtatatgaagaagatatcaacatctccagcaactgggaggtcttcctt
gaagtacttgatgaccctgagaaaatgaagtctatgtctcagctggctgtgctaacaagg
cgatggagcccgtcgcagatgaagctggaacccttccaggaagtggtcctggaaagcagc
agcgtcgatgaactcaagcagaagctgagtgagataagtgggattcctgttgaaaataca
gaatttgcaaagggtagaggaacatttccctgtgatatctcaatcttggaaattcaccag
gatttagattggaatccaaaggtatcgacactcaatgcttggcccctctatatctgtgat
gatggagcggtcgtcttttacagggacaagacagaggagctgatggatctgtcagatgaa
gacagaaatgaactcatgaaaaaagaaagcagtcgtctccttaagacaggacacagagtg
aactactctccccgaaaagagaaagcgctaaagatctatttggatggtgcaccaagtaaa
gactcaagccaggactga
DBGET
integrated database retrieval system
