KEGG   Paraburkholderia sprentiae: BJG93_05705
Entry
BJG93_05705       CDS       T04610                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pspw  Paraburkholderia sprentiae
Pathway
pspw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pspw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BJG93_05705 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pspw03400]
    BJG93_05705 (ligD)
Enzymes [BR:pspw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJG93_05705 (ligD)
DNA repair and recombination proteins [BR:pspw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJG93_05705 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: APA84922
UniProt: A0A1I9YF39
LinkDB
Position
1:1535903..1538731
AA seq 942 aa
MNDRLDLYHRKRRFEDTPEPAGAAARKRAASKTGKRAPRAAPDTLSYVIQEHHARRLHYD
FRLELNGALLSWAIPKGPSLDPSVKRLAVHVEDHPIEYGTFEGEIPPGNYGAGTVIVWDR
GTWEPAGSAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDEQA
RDESDYDVLKELPGSALTDGASKGRRTKQSKADTATPRDGTSASAGKPARSASSRRTTDP
KRPDIVATRSAQSLRELAVSPSIEGALKAALPASLKPELATLVDTAPPGDDWLYEIKFDG
YRVLARIDHASKAKGGAVSVFTRNGNDWTARFSKQIEAFAALELQSAWLDGEAVVLDERD
VPNFQLLQNAFDAHRPQDIVIYLFDLPFLNGYDLRGVPLEQRRAILRALLEGVDDRVLRF
SNDFAFSADELLESACDMALEGIIGKRRDSSYVSGRSPSWIKLKCRRRQEFVIGGYSEPS
GSRAAFGALLLGVYDGDGRLRYAGRVGTGFDAALLRSVKRALDAHPSKRMPFASEPRERS
RTPVHWVDPVLVAECNFAEWTSDGIVRQASFVSLRDDKPARQIVRETARQGADVQQQTDT
ASDDTPQTSAPNQRAAKKTGKTAKSGKTAAAAETAPARTTATRSRAHSEIAGVRISHPDR
VIDKSSGASKLELVQYYASIAEWMLPHLRERPVALVRAPEDIGGELFFQKHSQKLSIPHV
TQHEGLDPGHPPLITIDTAAALVGAAQMGTVELHTWNAVASNIEKPDRVVFDLDPDPSLG
WERMVEAAQLTRSLLDELGLKSFCKTSGGKGLHVIVPLAKQAGWDEVKAFSQAVAQHMAS
TLPQYFSAKMGAQNRKKKIFIDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDELDSTTS
GDQWNIRNVHERVDGLDNDPWADYAKTRQRITAAMKKRLGVA
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgaacgaccgactcgacctctatcaccgcaaacgccgcttcgaggacacgccggagccg
gccggcgcggcggcccgcaagcgcgccgcgagcaagaccggcaagcgcgcaccgcgcgcc
gcgcccgacacgctgtcctacgtgatccaggagcaccacgcgcggcgtctgcactacgac
ttccggctcgaactgaacggcgcgctgctgtcgtgggcgattccgaagggaccgagcctc
gacccgtcggtcaaacggctcgcggtgcacgtcgaggaccatccgatcgaatacggtacg
ttcgagggcgagattccgcccggcaactacggcgcgggcacggtgatcgtgtgggatcgc
ggcacgtgggagccggcgggcagcgcggccgaagccgcgcgatcgtatgcggccggcaag
ctcaagttccatttgcacggcgagaagctgcacggcggctggacgctcgtacgtagccac
atgcgcggcagcggcgacaaggaacaatggctgttgatcaaggagcgcgacgagcaagcg
cgcgacgaaagcgactacgacgtgctcaaagagctgccgggcagcgcgctgaccgacggg
gcttcgaaaggcaggagaaccaagcaatcgaaagcggacacggcaacgccgcgcgacggc
acgtccgcgagcgcaggcaagccggccaggtccgcatcctcgcgccgcaccaccgatccc
aaacgccccgacatcgtcgcgacccgcagcgcgcaatctctgcgcgaactcgccgtgtcg
ccatcgatagaaggcgcgctcaaagccgcattgcccgcgagcctgaagccggaactggcc
acgctcgtcgacaccgcgccgccaggcgacgactggctctacgagatcaagttcgacggc
taccgcgtgcttgcgcgcatcgaccatgcatcgaaagcgaagggcggtgccgtcagtgtt
ttcacgcgcaacggcaacgactggaccgccaggttcagcaagcagatcgaggccttcgcg
gcgctcgagctgcaaagcgcgtggctcgacggcgaagcggtcgtgctcgacgaacgcgac
gtgccgaactttcagttgctgcaaaacgcgttcgacgcgcatcgtccgcaggacatcgtg
atctatctgttcgatctgccgtttctgaatggctacgacctgcgcggcgtaccgctcgaa
cagcgtcgcgcgattttgcgcgcgctgctcgaaggcgtcgacgatcgcgtgctgcgcttt
tcaaacgacttcgcgttcagcgccgacgagctgctcgagagcgcgtgcgacatggcactc
gaaggcatcatcggcaaacggcgcgacagcagctatgtgtcgggccgctcgccgtcgtgg
atcaagctgaagtgccggcgccgccaggagttcgtgatcggcggctattccgagccgagc
ggcagccgcgcggcgttcggcgcgctgctgctcggggtgtacgacggcgacggccggctg
cggtacgcggggcgcgtcggcaccggcttcgacgccgcgctgctgcgctcggtcaaacgg
gcgctcgacgcgcacccgagcaagcgcatgccgttcgcgagcgagccgcgcgagcgcagc
cgcacgcccgtgcattgggtcgatccggtgctcgtcgccgaatgcaacttcgccgaatgg
acgagcgacggcatcgtgcgccaggcgtcgttcgtcagcctgcgcgacgacaagccggcg
cgccagatcgtcagggaaaccgcccgacaaggagccgacgtgcaacagcaaaccgacacc
gcttccgacgatacaccgcaaacaagcgcgccgaatcagcgcgcggccaaaaagaccggc
aagaccgccaagagcggcaagacggccgccgccgccgaaaccgcgcccgcccgaaccacg
gcaacacgctcgcgcgcgcacagcgaaatcgccggcgtgcgcatctcgcatcccgatcgc
gtgatcgacaaaagcagcggcgccagcaagctcgaactggtgcagtactacgcatcgatc
gccgaatggatgctgccgcatctgcgcgagcggccggtcgcgctggtgcgcgcccccgag
gacatcggcggcgagctgttctttcagaagcacagtcagaagctgtcgattccgcacgtc
acgcagcatgagggactcgatccggggcatccgccgctgatcacgatcgacacggccgcc
gcgctggtcggcgccgcgcagatgggcaccgtcgaacttcatacgtggaatgcggtcgcg
tcgaatatcgaaaagcccgatcgcgtggtgttcgatctcgacccggatccgtcgctcggt
tgggaacgcatggtcgaggccgcgcaactgacccgctcgctgctcgacgaactgggcctg
aagtcgttttgcaagacgagcggcggcaagggcttgcacgtgatcgtgccactcgcgaag
caggccggctgggacgaagtgaaggctttctcgcaggcggtcgcgcaacatatggcgtcg
acgctgccgcagtacttcagcgcaaagatgggcgcgcagaatcgcaagaagaagattttc
atcgactatctgcgcaacaaccgcggctcgagcacggtggcggccttctcggtgcgcgcg
cggccggggctcggcgtgtcggtgccgctcgcgtgggacgaactcgacagcacgacgagc
ggcgatcaatggaacatccgcaacgtccacgagcgcgtggacggcctcgacaacgacccg
tgggccgactacgcgaagacccgtcagcgcatcaccgcggcgatgaaaaaacgtctgggc
gtcgcgtga

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