Paraburkholderia sprentiae: BJG93_05705
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Entry
BJG93_05705 CDS
T04610
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pspw
Paraburkholderia sprentiae
Pathway
pspw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pspw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJG93_05705 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspw03400
]
BJG93_05705 (ligD)
Enzymes [BR:
pspw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJG93_05705 (ligD)
DNA repair and recombination proteins [BR:
pspw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJG93_05705 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APA84922
UniProt:
A0A1I9YF39
LinkDB
All DBs
Position
1:1535903..1538731
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AA seq
942 aa
AA seq
DB search
MNDRLDLYHRKRRFEDTPEPAGAAARKRAASKTGKRAPRAAPDTLSYVIQEHHARRLHYD
FRLELNGALLSWAIPKGPSLDPSVKRLAVHVEDHPIEYGTFEGEIPPGNYGAGTVIVWDR
GTWEPAGSAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDEQA
RDESDYDVLKELPGSALTDGASKGRRTKQSKADTATPRDGTSASAGKPARSASSRRTTDP
KRPDIVATRSAQSLRELAVSPSIEGALKAALPASLKPELATLVDTAPPGDDWLYEIKFDG
YRVLARIDHASKAKGGAVSVFTRNGNDWTARFSKQIEAFAALELQSAWLDGEAVVLDERD
VPNFQLLQNAFDAHRPQDIVIYLFDLPFLNGYDLRGVPLEQRRAILRALLEGVDDRVLRF
SNDFAFSADELLESACDMALEGIIGKRRDSSYVSGRSPSWIKLKCRRRQEFVIGGYSEPS
GSRAAFGALLLGVYDGDGRLRYAGRVGTGFDAALLRSVKRALDAHPSKRMPFASEPRERS
RTPVHWVDPVLVAECNFAEWTSDGIVRQASFVSLRDDKPARQIVRETARQGADVQQQTDT
ASDDTPQTSAPNQRAAKKTGKTAKSGKTAAAAETAPARTTATRSRAHSEIAGVRISHPDR
VIDKSSGASKLELVQYYASIAEWMLPHLRERPVALVRAPEDIGGELFFQKHSQKLSIPHV
TQHEGLDPGHPPLITIDTAAALVGAAQMGTVELHTWNAVASNIEKPDRVVFDLDPDPSLG
WERMVEAAQLTRSLLDELGLKSFCKTSGGKGLHVIVPLAKQAGWDEVKAFSQAVAQHMAS
TLPQYFSAKMGAQNRKKKIFIDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDELDSTTS
GDQWNIRNVHERVDGLDNDPWADYAKTRQRITAAMKKRLGVA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgacctctatcaccgcaaacgccgcttcgaggacacgccggagccg
gccggcgcggcggcccgcaagcgcgccgcgagcaagaccggcaagcgcgcaccgcgcgcc
gcgcccgacacgctgtcctacgtgatccaggagcaccacgcgcggcgtctgcactacgac
ttccggctcgaactgaacggcgcgctgctgtcgtgggcgattccgaagggaccgagcctc
gacccgtcggtcaaacggctcgcggtgcacgtcgaggaccatccgatcgaatacggtacg
ttcgagggcgagattccgcccggcaactacggcgcgggcacggtgatcgtgtgggatcgc
ggcacgtgggagccggcgggcagcgcggccgaagccgcgcgatcgtatgcggccggcaag
ctcaagttccatttgcacggcgagaagctgcacggcggctggacgctcgtacgtagccac
atgcgcggcagcggcgacaaggaacaatggctgttgatcaaggagcgcgacgagcaagcg
cgcgacgaaagcgactacgacgtgctcaaagagctgccgggcagcgcgctgaccgacggg
gcttcgaaaggcaggagaaccaagcaatcgaaagcggacacggcaacgccgcgcgacggc
acgtccgcgagcgcaggcaagccggccaggtccgcatcctcgcgccgcaccaccgatccc
aaacgccccgacatcgtcgcgacccgcagcgcgcaatctctgcgcgaactcgccgtgtcg
ccatcgatagaaggcgcgctcaaagccgcattgcccgcgagcctgaagccggaactggcc
acgctcgtcgacaccgcgccgccaggcgacgactggctctacgagatcaagttcgacggc
taccgcgtgcttgcgcgcatcgaccatgcatcgaaagcgaagggcggtgccgtcagtgtt
ttcacgcgcaacggcaacgactggaccgccaggttcagcaagcagatcgaggccttcgcg
gcgctcgagctgcaaagcgcgtggctcgacggcgaagcggtcgtgctcgacgaacgcgac
gtgccgaactttcagttgctgcaaaacgcgttcgacgcgcatcgtccgcaggacatcgtg
atctatctgttcgatctgccgtttctgaatggctacgacctgcgcggcgtaccgctcgaa
cagcgtcgcgcgattttgcgcgcgctgctcgaaggcgtcgacgatcgcgtgctgcgcttt
tcaaacgacttcgcgttcagcgccgacgagctgctcgagagcgcgtgcgacatggcactc
gaaggcatcatcggcaaacggcgcgacagcagctatgtgtcgggccgctcgccgtcgtgg
atcaagctgaagtgccggcgccgccaggagttcgtgatcggcggctattccgagccgagc
ggcagccgcgcggcgttcggcgcgctgctgctcggggtgtacgacggcgacggccggctg
cggtacgcggggcgcgtcggcaccggcttcgacgccgcgctgctgcgctcggtcaaacgg
gcgctcgacgcgcacccgagcaagcgcatgccgttcgcgagcgagccgcgcgagcgcagc
cgcacgcccgtgcattgggtcgatccggtgctcgtcgccgaatgcaacttcgccgaatgg
acgagcgacggcatcgtgcgccaggcgtcgttcgtcagcctgcgcgacgacaagccggcg
cgccagatcgtcagggaaaccgcccgacaaggagccgacgtgcaacagcaaaccgacacc
gcttccgacgatacaccgcaaacaagcgcgccgaatcagcgcgcggccaaaaagaccggc
aagaccgccaagagcggcaagacggccgccgccgccgaaaccgcgcccgcccgaaccacg
gcaacacgctcgcgcgcgcacagcgaaatcgccggcgtgcgcatctcgcatcccgatcgc
gtgatcgacaaaagcagcggcgccagcaagctcgaactggtgcagtactacgcatcgatc
gccgaatggatgctgccgcatctgcgcgagcggccggtcgcgctggtgcgcgcccccgag
gacatcggcggcgagctgttctttcagaagcacagtcagaagctgtcgattccgcacgtc
acgcagcatgagggactcgatccggggcatccgccgctgatcacgatcgacacggccgcc
gcgctggtcggcgccgcgcagatgggcaccgtcgaacttcatacgtggaatgcggtcgcg
tcgaatatcgaaaagcccgatcgcgtggtgttcgatctcgacccggatccgtcgctcggt
tgggaacgcatggtcgaggccgcgcaactgacccgctcgctgctcgacgaactgggcctg
aagtcgttttgcaagacgagcggcggcaagggcttgcacgtgatcgtgccactcgcgaag
caggccggctgggacgaagtgaaggctttctcgcaggcggtcgcgcaacatatggcgtcg
acgctgccgcagtacttcagcgcaaagatgggcgcgcagaatcgcaagaagaagattttc
atcgactatctgcgcaacaaccgcggctcgagcacggtggcggccttctcggtgcgcgcg
cggccggggctcggcgtgtcggtgccgctcgcgtgggacgaactcgacagcacgacgagc
ggcgatcaatggaacatccgcaacgtccacgagcgcgtggacggcctcgacaacgacccg
tgggccgactacgcgaagacccgtcagcgcatcaccgcggcgatgaaaaaacgtctgggc
gtcgcgtga
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