Punctularia strigosozonata: PUNSTDRAFT_120001
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Entry
PUNSTDRAFT_120001 CDS
T03131
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PUNSTDRAFT_120001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psq03400
]
PUNSTDRAFT_120001
Enzymes [BR:
psq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PUNSTDRAFT_120001
DNA repair and recombination proteins [BR:
psq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PUNSTDRAFT_120001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
DNA_ligase_A_C
Solute_trans_a
BRCT_3
Motif
Other DBs
NCBI-GeneID:
18877221
NCBI-ProteinID:
XP_007382816
JGI:
120001
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MLPTPAPSSPPRSPRQVPASTQQDGTSYPAPPPSVGSAPFYVLIQLFEKLQNERKPERRK
RLLDGWFNHWRQEIGYDLYPVLRLILPQKDRERAVYGLKEKNLAKAYIKLIPLGMKDADA
IRLLNWKKPADKDRSSGDFPTVLYEVVNKRSSVIKGLLTVHELNDVLDELSQNIGKQDVQ
SRILQRVYNRSTPEEQRWIVRIILKDMTISVKETTVFSVFHPDAHDLFNTCSDLKKVVWE
LWDPKRRLNAADKTIQLFRSFAPMLCKRPTRRLEDSVKEMGGRTFFIEEKLDGERMQLHK
RGNEYFYCSRKGKDYTYLYGKHVGMGSLTPFIDKAFDSRVEDIILDGEMLVWDPVSGRNL
PFGTLKTAALDRTRKEQNPRPCFKVFDLLYLNGMPLLQKSTKFRRRNLRACLTPIPGRIE
LVSEFEGKTAKDVRTRMEEVMENRGEGLIIKHPDSEYVLNGRNKDWIKVKPEYMDNMGET
VDVLVVAGNYGTGHRGGGVSTLVCAVLDDRRRPEEDDEPKYASVVRIGSGLSFADYVWIR
SKPWKIWAERNPPSFYLTAPKGTEDKGDVYLEPEDSFIIKVKAAEIVTSDLYYLGFTMRF
PRAVNIRDDLSVADCMTATEFLAEMSESKKRKVEEETVKPEKKRKTASKVHVLSEYGMGG
SRLKDVAVESVLFRGMRFMVVSDPKSRTGDEDKRDLMKLIHANGGKVAQVVSKKFPTLVV
YGGSTIPYDIRLIMQKDEADIIKPQWIFDCLSQSEVIPMTKKYFFHATSRRQETDEYRLP
DDDTVMAETANVALRPAIPTQQEDPEPKEEEDPSLTDWFNVKGDATAHQSPPGSDTESET
EPESDNEDTKEEDTEDGWYKIENLMSSEDAGRITELAEVVRGPQVEEEAEAAKMGEDDEA
MEYDQNLIFKHLCFYLDTPMNARNHGMPIKTKHESDIQQRFVEIDRLIRENGGRVADLDD
PKLTHIVLDKRDDSRRRELTKRTSK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgactcctgctcccagttctccgcctcgttcgccacggcaagtgccagccagc
acccagcaagacggtaccagctatcctgcgccaccccctagtgtcggaagtgcaccattc
tacgtcctgatccagctcttcgagaagctccaaaacgagcgtaaacccgaacgcaggaag
agactgctggacggatggttcaaccattggcgccaagagataggctacgacctatatcct
gtcctgcgcttgattcttcctcagaaagatcgtgagagggccgtgtatggcctgaaggag
aagaacttggcgaaagcatacatcaagctaataccccttgggatgaaagacgcagatgcc
atccggttactgaattggaagaaacctgccgataaagatagatcttcgggggatttcccc
actgtcttgtacgaggtcgtgaacaagcggtcatccgtcataaaaggcttgctgaccgta
cacgaactgaatgacgttctcgatgagttgtctcagaatataggaaaacaagatgtacaa
tctaggattttgcagcgagtatataaccgttcaacgccggaggagcaacgctggatcgtc
cgtattatattgaaagatatgaccatctccgtcaaggaaaccaccgtgttctcagttttc
caccccgacgcccacgatctattcaacacttgttccgacctcaagaaggttgtgtgggaa
ctgtgggatcctaaaagacgtctgaacgccgcagacaagacgatccagttgtttcgttcg
tttgcaccgatgctctgcaaacgtccgacccgtcgactcgaagattcggtcaaggagatg
ggtggccggacgttcttcatagaagagaagctcgatggagaacgcatgcagcttcataaa
cgcgggaacgaatatttctactgctcgaggaaggggaaggattacacatatctatatggc
aagcatgttgggatgggtagccttacccctttcatcgacaaggcgttcgattcgcgagta
gaagatatcattcttgatggtgaaatgcttgtatgggatcctgtctccgggagaaacttg
ccattcggcaccctcaaaaccgcggcgttagatcggacgagaaaagaacagaatcctcgc
ccatgtttcaaggttttcgatctcttgtacctcaacggcatgcctctactgcagaaatcc
accaaattccgacgacggaacctgcgggcctgtttgaccccgatacccggtcgcatagaa
cttgtcagcgagttcgagggcaagacggccaaggacgtacgcacgcgcatggaagaggta
atggagaaccgtggagaaggccttattatcaagcacccggacagcgagtacgtgctcaat
ggacgtaacaaggattggatcaaagtgaagcccgagtacatggacaatatgggggaaacc
gttgatgtactggtcgttgccgggaactacggaactggacatcgtgggggcggtgtgtcg
accctggtgtgtgcggtcctggacgatcgccgaagaccggaggaggatgacgagccaaaa
tatgcctccgtcgtgcgtattggttccggtctcagtttcgccgactacgtatggatccgg
agtaaaccctggaaaatatgggccgagagaaatcctcctagcttttaccttacagcccca
aagggtaccgaggataaaggcgatgtatatctcgaaccagaagattctttcataatcaaa
gtgaaggctgctgagattgttacttcggacttgtattatcttggtttcacgatgagattt
cctcgcgcagtgaacatacgtgacgatctttccgttgccgattgcatgacagctacggag
tttctggctgaaatgtcggagagtaagaagcgcaaggtagaagaggagactgtgaagccg
gaaaagaaaagaaagacggcgtcgaaggttcacgtcctctccgaatatggaatgggtggg
tcgaggctgaaggatgtggcggtcgaatcggttctattcagaggaatgagattcatggta
gtatccgacccaaaatcgaggactggggacgaggacaagcgcgacctgatgaaactaatc
cacgccaacggtggaaaggtggcccaagttgtctcgaagaagttccctacactggttgtg
tatggagggtcgacaattccatacgacataaggttgatcatgcagaaggatgaggctgat
atcattaagcctcagtggatcttcgactgcctctcacagagcgaagtgatccctatgacg
aagaaatacttcttccacgcaacgtctcggaggcaggaaaccgacgagtatcggctaccg
gatgacgatacggtcatggcagaaacagcgaatgtcgcgttacgccccgcaatcccaact
cagcaagaggatccggagcctaaggaagaggaagatccgtccctgacggattggttcaat
gtcaagggcgacgcgactgcacatcagtcaccgcccggttctgacacagagtcagaaacc
gaaccagaatccgacaacgaagacaccaaagaagaagatactgaggatggctggtataag
attgagaatctcatgtccagcgaggatgcaggaaggatcacagaactggcggaagttgtt
cgtggacctcaggtcgaggaagaagccgaagcggcgaagatgggcgaagacgacgaagcc
atggaatacgatcagaacctaatcttcaagcatctctgcttctacttggatacacctatg
aacgcgcgaaaccatggcatgcctatcaagaccaaacacgagtccgacatccagcaacgc
ttcgttgagatcgacagactgatcagggagaacggcggacgcgtcgcagacttggacgat
ccgaagctcacacacatagttctggacaagagggacgatagccggcggcgagagctgacg
aagcggacgtcaaagtaa
DBGET
integrated database retrieval system
