Punctularia strigosozonata: PUNSTDRAFT_123034
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Entry
PUNSTDRAFT_123034 CDS
T03131
Name
(RefSeq) transcription factor Tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
psq
Punctularia strigosozonata
Pathway
psq03022
Basal transcription factors
psq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PUNSTDRAFT_123034
09124 Replication and repair
03420 Nucleotide excision repair
PUNSTDRAFT_123034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_123034
03400 DNA repair and recombination proteins [BR:
psq03400
]
PUNSTDRAFT_123034
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PUNSTDRAFT_123034
DNA repair and recombination proteins [BR:
psq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PUNSTDRAFT_123034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
18877617
NCBI-ProteinID:
XP_007388743
JGI:
123034
UniProt:
R7S262
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MAVPAVVEEGALQQLPHSLLPFLQAQSQGTLTRLWGRPSACLSVFRLLRPLDQQLVMNLL
WLESAVPAQTMQQWIVPGGNNRKLYHASLEILSRLHILSGNTQVRLQLNSTWKASLRAAI
TGGTVATSSGSFGIPAERGAKDSMDKDGLDAFALERWETILHFMVSSGTAHNPPRPSAGV
LFLLQRSGLMGGGGNPQITSAGFQFLLHEPHAQLWELLLQYLRMAEERQMDLVEVLSFIF
MLSTTELGREYSTENLSDTQKAMLEDLRDYGLIWQQKPTSKRFSPTRLATTLTSSSPPLP
TSGSGVSEGFIVLETNYRLYAYTDNPLQTAVLALFTTLRSRFPNLVVGQITRESVKRALQ
SGISAEQIISYLSTHAHPQMRKNNPLIPVTVQDQIRLWELEKNRLKSQEGFLYTEFASQG
DYEYVLNYARELNVVLWENPVKRCFFGSMEGHANIRGFIERRKAQAG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacctgcagtcgtggaagaaggcgccttgcaacaactgcctcactccttgctc
ccattcctacaagcacagtcgcaggggaccttgacgcgcctatggggacggccaagcgca
tgcctgagcgtatttcggctgttaaggcctttggaccagcagcttgtcatgaaccttctg
tggcttgagtctgccgtgccggcgcaaacaatgcagcaatggatagtacctggtggaaac
aatcgaaagctttaccacgcttctcttgagatactgtccaggcttcatattctgagcgga
aatacacaagtcaggctccaactgaactcgacctggaaagcgagcttgagggcggcaata
acaggcggaactgtcgcaacatcgtctgggagtttcggaattcctgcagaacggggcgcc
aaagattcgatggataaggatggcttggatgctttcgctctggaacgatgggagactatc
ctgcacttcatggtttcatccggcaccgcccataatcctcctcggccctcagcaggcgta
ctctttctgttacaacgcagcggcctgatgggtggcggaggcaatcctcaaatcacatcg
gccggtttccaatttctgttacacgagccacatgcacaattgtgggagcttttgctccag
tatctgaggatggcggaggagcgtcagatggacctcgtcgaggtgctgtctttcatcttc
atgctatcaactacggagttgggacgggagtactcgaccgaaaatttgtctgacacgcag
aaggcaatgctggaggacttgcgggattatggattaatatggcaacaaaagccaacgtcg
aagcggttttcgccgacacgactggcgaccacactcacgtcgtcgtcaccgcccctgccc
acgtcgggcagcggcgtgtcggaaggcttcattgtgctcgagacaaactacaggttatac
gcctacactgataaccccttacaaactgccgttctcgctcttttcaccacccttcgctcc
cgctttcccaacctcgtcgtgggacagatcacccgagagagcgtcaaacgtgcactccaa
agcggcatcagcgcggagcagatcatcagttatttgtcgacgcacgctcaccctcaaatg
cgaaaaaataaccctcttatacccgtgacagtgcaggatcagatacggctatgggagctt
gaaaagaacaggctcaagtcgcaggaaggcttcctctacaccgagttcgcctcgcagggc
gactacgagtacgtccttaactacgcgagggagctaaatgtggtactttgggagaacccc
gtcaagcgttgcttctttgggagcatggaagggcacgccaacatacgagggttcattgag
cggcggaaggcgcaggctggttaa
DBGET
integrated database retrieval system