Pelodiscus sinensis (Chinese soft-shelled turtle): 102450038
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Entry
102450038 CDS
T02980
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03013
Nucleocytoplasmic transport
pss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102450038 (UPF1)
03015 mRNA surveillance pathway
102450038 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pss03019
]
102450038 (UPF1)
Enzymes [BR:
pss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102450038 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102450038 (UPF1)
Messenger RNA biogenesis [BR:
pss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102450038 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102450038 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102450038
NCBI-ProteinID:
XP_006132381
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
TIKFLSQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIH
DPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCR
NVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQ
EQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPL
VKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD
LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKT
FAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL
IQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSR
EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN
ADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
RVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ
IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKAGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
acaatcaaatttctctctcaggttaatggtcctgatggaatcctccagaatggtgcagtg
gatgataatgtagcaaaaaccagccaattgcttgcagaattaaactttgaagaagatgaa
gaagatacctattacaccaaggatcttcctgtgcatgcttgcagttattgtggtatccat
gacccagcttgtgtggtttactgcaataccagcaagaagtggttctgtaatggacgtggc
aatacatctggcagccacattgtaaatcatcttgtgagagcgaagtgtaaagaggtgact
cttcacaaagatggccctttgggagagactgttttggaatgttataattgtggatgccga
aatgtgttcctccttggcttcattccagcaaaggctgactcggtagttgtattactgtgc
aggcaaccgtgtgccagtcaaagcagtttaaaggatattaattgggacagctcacagtgg
caacctcttattcaggatcgctgtttcctttcctggctcgtaaagattccttctgaacag
gagcagttgagagcacgtcagattacagctcaacaaattaacaaactagaagaactttgg
aaggaaaatccatctgcaacccttgaagacttggaaaaaccgggtgtcgatgaagaaccg
cagcacgttttacttagatatgaggatgcttatcagtaccaaaatatttttggacctcta
gtcaagcttgaagcagattatgacaagaaactcaaggagtcccagacccaagataacatc
acagtgagatgggacctgggcttgaacaagaagagaattgcttacttcactttgccaaag
actgactcagatatgcgtcttatgcagggagacgaaatctgcctgagatataaaggagac
ttggcccctttgtggaaaggaattggtcatgttattaaagttcctgataattacggtgat
gagatagctattgagctgaggagcagtgttggagcacctgtggaagtaactcataacttc
caggtggattttgtgtggaagtctacttcatttgacagaatgcagagtgctttaaaaaca
tttgcagtggatgaaacttcagtgtctggctacatctaccacaaactgttaggtcatgag
gtggaagatgtgattattaaatgccagttgccaaagcgttttacagcacaaggacttcct
gacctcaaccattctcaggtttatgctgtaaagactgtcttgcagcgtcctcttagcctt
atccaaggtccccccggtacaggaaaaactgtgacatcagccactattgtctatcattta
gctcggcagggcaacgggcctgtgttagtttgtgccccaagtaacatagctgtggatcag
ctcactgagaagattcatcagacaggactaaaagttgttcgtctgtgtgctaaaagtcgt
gaggcgattgattctcccgtatctttcttggcattgcacaaccagatcagaaacatggat
agtatgcctgagctccagaaattgcagcagctgaaagatgaaactggagaattgtcatct
gccgatgagaaacgctatcgtgcactgaaaagaacagcagagcgtgaattgcttatgaat
gcagatgttatttgttgcacgtgtgtgggagcaggtgacccgagacttgcaaaaatgcag
ttccgttccattttaattgatgaaagcacacaagctactgaaccagaatgtatggtgcca
gttgttctgggagccaagcagctgatccttgtaggtgatcactgccagcttggtcctgtg
gtgatgtgtaagaaagctgcaaaggcaggcttgtctcagtccctttttgagaggcttgtg
gtgttgggtattcgtccaattcgcctgcaagtgcagtaccgtatgcatcctgcacttagt
gcttttccatccaacatcttctatgagggctcgctccagaatggtgttactgcagcggac
cgtgtgaaaaagggatttgatttccaatggccccagccagataagccaatgtttttctat
gtgacgcagggtcaagaagaaattgccagttcaggcacctcttacttaaacaggacggaa
gctgctaatgtggagaaaataactacaaagttattgaaagctggtgccaagccagatcag
attggcatcattactccctatgagggccagcgttcttacctggtgcagtacatgcagttc
agcggttccttgcatacaaaactctatcaggaagtggaaatcgcaagtgttgatgctttc
caaggacgagagaaggactttattatcctttcttgtgtaagagccaatgagcaccaagga
attggatttttgaatgatcccagacgtcttaatgtagctctcaccagagcaagatacgga
gtaattattgttgggaacccaaaagctctgtctaaacaaccctactacaaggagcagaaa
gtactggtagagggaccactaaacaacctccgagagagccttatgcagttcagcaagccc
cgtaaacttgtcaataccatcaacccaggtgcccggttcatgaccactgccatgtatgat
gcacgcgaagccattatcccagggtcagtctatgaccggagcagtcaaggacgcccctcc
aacatgtacttccaaacccacgatcagattggaatgattagtgcaggacccagccatgtc
actgctatgaacattcctatccctttcaacctcgtgatgcccccgatgccacccccagga
tattttgggcaggctaatggaccggccgcagggcgtggggcacctaaaggaaaggctggt
cgtggtgggcgccagaaaaaccgttttggaattcccggaacaagccaatcaaatcttccg
aacagtcaagcgagccaagatgtggtgtcccaaccattctcccagggtccgctgactcag
ggctacatctccatgagtcagccatcgcagatgagccagccaggactctcccagccagaa
ttatcccaggacagttaccttggtgatgagtttaaatctcagattgatgtggcgctgtca
caggactctacttaccagggggaacgtgcatatcaacatggtggagtgacggggctgtca
cagtattag
DBGET
integrated database retrieval system
