Pseudomonas syringae pv. tomato DC3000: PSPTO_1253
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Entry
PSPTO_1253 CDS
T00118
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_1253 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_1253 (rhlB)
Enzymes [BR:
pst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPTO_1253 (rhlB)
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPTO_1253 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
AAO54778
UniProt:
Q887N8
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All DBs
Position
complement(1375533..1376726)
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AA seq
397 aa
AA seq
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MEPQEGKTRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTA
AFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGG
MDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVR
QIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG
ADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLE
GFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFA
GEDDSYQLPAIEEKLGRKISCETPPTHLLRAVVRQTN
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
gtggagccacaggaaggcaagacccgcttccatgacttcaacctggcccccgaactgatg
cacgcgattcaggaccttggttttccctattgcacgccgatccaggcgggtgtgctgggt
ttcaccctcaagggcaaggacgccatcggccgcgcccagacaggcaccggcaagaccgct
gcgttcctgatctcgatcatcgagcaactgacccagacaccgccgccggcagagcgctac
atgggcgaaccccgcgcactgatcatcgcgccgacccgcgaactggtggtgcagatcgcc
aaggacgccgccgacctgaccaaatacaccaacctcaacgtcatgacgtttgtcggtggc
atggacttcgacaaacagctcaagcagcttgaagcgcggcactgtgacattctggtcgcc
acgccgggtcgcctgctggacttcaaccagcgcggcgaagtgcacctggacatggtagag
gtgatggtgctcgatgaagccgaccgcatgctcgacatgggcttcatcccgcaggtccgg
cagatcattcgccagaccccgcacaagggcgaacgccagaccctgctgttctccgcgacc
ttcaccgaagacgtgatgaaccttgccaagcagtggacgaccgatccttccatcgtcgag
atcgaatccttgaatgtcgccagcgacaacgtcgaacagcatatctatgccgttgccggt
gccgacaaatacaagttgctctacaacctggtcaccgacaacggctgggaacgggtcatg
gtctttgccaaccgcaaggatgaagtgcgccgcatcgaagagcgtctggtacgcgatggc
gtcaacgccgcgcaactgtcaggcgatgtgccgcagcacaagcgcatcaagacccttgaa
ggtttccgcgaaggcaagatccgcgtactggtcgccaccgatgtggccggtcgcgggatt
cacatcgacggcatcagccacgtgatcaacttcaccctgccggaagttccggacgactac
gtgcaccgcatcggccgtaccggtcgcgcaggggccgatggcgtctcgatcagcttcgcc
ggggaagacgactcctaccagttgcccgccatcgaagagaagctgggccgcaagatcagc
tgtgaaacaccgccgactcatctgctcagagcagtcgtgcgacaaaccaactga
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