Pseudomonas syringae pv. tomato DC3000: PSPTO_1270
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Entry
PSPTO_1270 CDS
T00118
Symbol
holC
Name
(GenBank) DNA polymerase III, chi subunit
KO
K02339
DNA polymerase III subunit chi [EC:
2.7.7.7
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03030
DNA replication
pst03430
Mismatch repair
pst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPTO_1270 (holC)
03430 Mismatch repair
PSPTO_1270 (holC)
03440 Homologous recombination
PSPTO_1270 (holC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pst03032
]
PSPTO_1270 (holC)
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_1270 (holC)
Enzymes [BR:
pst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSPTO_1270 (holC)
DNA replication proteins [BR:
pst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSPTO_1270 (holC)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSPTO_1270 (holC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_chi
Motif
Other DBs
NCBI-ProteinID:
AAO54795
UniProt:
Q887M1
LinkDB
All DBs
Position
complement(1393014..1393442)
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AA seq
142 aa
AA seq
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MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF
LPHGDAESDHDAPVVLGLGDDSGTHQDLLVNLDLSIPAFFKRFARVAEVVVEDPAIRLAA
RESFRSYREQGYPPQDHRLQRL
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagtcgacttctacatcctgcccagcgctgaccctgcggcccgcctggacttt
gcctgcaaactcacggaaaaggcctggcgcctgggccacaaggtttacctgcactgcagc
gatgcagcgcagcgtgaagacctggacgcacggctctggcgcttccggggcgaagtgttt
ctgccccacggcgacgccgagagcgatcacgatgcacccgtggtgctgggcctgggcgat
gactcgggcacgcatcaggacctgctggtcaacctcgacctgagcattccggccttcttc
aagcgcttcgcccgtgtcgcggaagtggttgtcgaagacccggccatacgccttgccgca
cgcgagagtttccgttcctaccgcgaacagggctatcctccgcaagatcaccgactgcag
cgtctttga
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