Pseudomonas syringae pv. tomato DC3000: PSPTO_3464
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Entry
PSPTO_3464 CDS
T00118
Name
(GenBank) DNA ligase, ATP-dependent, putative
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSPTO_3464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_3464
Enzymes [BR:
pst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSPTO_3464
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSPTO_3464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AAO56939
UniProt:
Q87ZG5
LinkDB
All DBs
Position
complement(3908246..3910801)
Genome browser
AA seq
851 aa
AA seq
DB search
MVKPASEYTRKRNFDVTSEPLESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKS
WAVPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRK
TYEDGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQ
SVISGAHVGAGRSAPAKPKAKAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGDW
LYEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDE
QGLPDFQGLQNAFDEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVLGSQRSRLL
RYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYTA
PQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLTS
AQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRGDKPAGDVVREDAQPAEAASVTP
EPSRQPGKKTARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILPYLNKRPV
ALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGAAQMGAIE
LHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLKTSGGKGM
HIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLRNSRGGST
VTAYSVRARPGLPVSVPIALHELTGLTSSAQWDITNLEQRLSQLKSDPWAGYSNRRKITQ
KMWKQLGAKQP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagccagccagtgaatacacgcgcaagcgcaactttgacgtcacctccgagcct
ttggagagcaaacgtaaaggcaaggcgcggtccggtgcactgagttttgtgattcagaag
cacgatgcgcgcaacctgcattacgactttcggctggaactggacggtacgctgaagagc
tgggcggtgcccaaagggcccagcctggacccgaaacagaagcgtctggccgtgcatgtc
gaagatcatccgctggactacgccgcttttgaaggcagcattccgaagggccagtacggc
ggaggcgatgtaatcgtctgggacaggggcatctggcaaccccatggtgatccacgcaag
acctatgaggacggcaaactcaagttcaccctgatcggcgaaaaactcagtggcgagtgg
gcgctggtgcgcactcggctcaagggcagtggcagcaaggagcagtggctgctgatcaag
gaaaaggacgacatcgcgcgacctgccgccgaatacgacatcaccgaggcgcaaccgcaa
agcgtgatcagcggtgcgcacgtcggggcagggcgttcagcgccagcaaagcccaaagcc
aaggctgttgaagcgaagcctgcgcgcaagcccgcacccaaaaaggcgaaagccgttttc
ccggacacgtttgcgccgcaactggcgacactggtcgatgcgccgcctgcgggcgactgg
ctgtacgagatcaagtttgacggctatcgcatgctgacgcgtatccagaatgacgaggtg
cgtctgttcacccgtaacggcaacgactggactgaccagttgcccgagctgaccaaggcg
ctcaagggcctgaagttgcaagacagttggttcgacggcgaagtggtggtgctcgacgag
caagggctgccggattttcaggggttgcagaatgcctttgatgaggggcacagcaaaaat
attttctattacctgttcgacatgccgtttctgagcggcgaagacctgcgcgaagtgcct
cttgagcagcgtcgcgacgctttgaaacaagtgctcggcagccagcgcagccgcttgctg
cgctattcggatgcgtttcaggccgggcatcaggacatcgtggccagtgctgcggcgatg
ggcctggagggcgtaatcggcaagcgcgctggcagcgcgtacgttggcaagcgcaatgcc
gactggatcaagctcaaatgccggttgcgccaggaattcgtgatcgtcggttataccgcg
ccacaaggcagccgctcggccttcggcgcgctgttgttggcggtcaatgacgatgctcag
gggctggtgtatgccggacgggtcggcaccgggtttaccgaggcgacgctcaaacacgtg
cacaagcaactgaaaccgctgcaccgcgaggaatcgcccttggcgaaaaaactgacctcg
gcgcaggcgcgcggcgtgcagtgggtcgagccgacgctggtctgcgaagctgagtttgcg
cagtggactcgcgagggcatcgtgcgtcaggcagcgtttttcggcctgcgcggtgacaag
ccagctggcgatgtggtgcgtgaagacgctcagccagccgaggctgcgtcagtcactcct
gagccctccaggcagcccggcaagaaaactgcccgaggcaaggttgatgtggcgggcact
ggcatcagtcatccgcagcgggtgatcgacagcactacaggcacgaagaaaatcgagctt
gcgcagttttacgagtctatcgccgactggattctgccgtacctgaacaagcggccagtg
gcattgctgcgctgcccggaaggcatcgacggcgagcagttttttcagaaacacgccgag
caccttgccataccgcatatcaggcagctggatcgggcgctggaccccggccacgccgcg
ctgatggagatcgactctgtgcaggcgctggtgggcgcggcgcagatgggcgccatcgag
ttgcacacctggggcgcgacccgcgacaggatcgaaacaccggatcattttgtgctggac
cttgacccagacccggcgctgccctggcgcagcatgatcgaggccacgcaaatggttctc
gccgtactggaggagctggggcttgaggcttttctcaagaccagtggcggcaaaggcatg
cacattattgtgccgctggcgcgacaggccgagtgggacaccgtgaaagccttcgccaag
gccatcgccgagttcatcagccgtcagttgccggaacgcttcacagccacaatggggccg
aaaaaccgggtcggcaagattttcatcgattacctgcgcaacagtcgtggcggcagcaca
gtgaccgcctattcggtacgcgcccggccgggtttgccggtctcggtgccgattgcgctg
catgagctgaccggtctgacgtcgtcggcgcaatgggacatcaccaaccttgagcaacgc
ttgagccagctcaagagtgacccgtgggccggttacagcaaccggcgcaaaatcacgcaa
aagatgtggaaacagctgggggctaaacagccttga
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