Peredibacter starrii: SOO65_14225
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Entry
SOO65_14225 CDS
T09598
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psti
Peredibacter starrii
Pathway
psti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SOO65_14225 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psti03400
]
SOO65_14225 (ligD)
Enzymes [BR:
psti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SOO65_14225 (ligD)
DNA repair and recombination proteins [BR:
psti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SOO65_14225 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WPU63848
LinkDB
All DBs
Position
complement(2851519..2853309)
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AA seq
596 aa
AA seq
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MAPQLPRLVTEVPAGDSHWVHEMKLDGYRIQTHLKNGVGTLYTRNGLDWSNTFPHILYAL
EQLPAQNAIFDGEIVALDEQGKSNFQKLQNSLKSKNDLSLQYFVFDLLFLDGKDLRDLPL
LERKEMLAQLLKDAPPLIHLSEHIDGAGEDFYQISCEEGLEGIVSKLADSPYISGRNDFW
AKTKCSLRQEFVIGGWTEPKGGRTGIGALLLGTYEKKKFRYVGRVGTGFNTATLRDMKKD
LSSIEEEESPFDVNSPKGKDIHWVKPIRLCEVSFGNWTDEGILRTPVFQGMRVDKEAQEV
VKEIAKEISSPDKILFKKEKITKQQVLDFYRTVSKVMLPYMAGRPLSLVRCPNGSESQCF
FQKHISGKVPDAFNTFPIKEEKGPGIYLSIDSKRGLEELVQLNAFEIHAWNSHWENYMRP
DQIVMDLDPGPGVTWKEVVDGAFELKEMLEDLGLESFVKLTGGKGLHLHIPVAPLYDWDQ
IKSFSEALALELVSRNPKKYVANMSKKIRHKKIFVDYLRNGYGATAVVPYSLRAKPLSAV
ALPVEWSELKRIKGPQEFTIDKALKKIKSRKRDPWTGMLKLKQKISILTPVKKMAA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtggcccctcaacttccgcgtcttgtgactgaagttccggccggcgactcccattgggtt
catgagatgaaactggatgggtatcggattcagactcatttgaagaacggagtaggcacc
ctctataccagaaatggtctcgactggagtaacacttttccgcacatcctttatgcactt
gaacaacttcctgcacagaatgccatctttgatggcgaaattgttgccttggatgaacag
gggaagagtaactttcaaaaacttcaaaattcactcaagagtaagaatgatctaagcctt
cagtactttgtttttgatcttttatttttagatggaaaagatttgcgcgacttacctctg
cttgaaagaaaagagatgctggcgcaactgcttaaggatgctccgccacttattcattta
agtgaacatattgatggggccggggaagacttttatcaaatctcctgtgaagaaggactt
gaaggtatcgtttcaaaactcgctgatagtccttatatctctgggagaaatgatttttgg
gcgaaaaccaaatgcagtctgagacaagaatttgttattgggggatggaccgaacccaaa
ggtggcagaactgggatcggggctcttcttttgggtacgtatgagaaaaagaaatttcgt
tatgtcggaagagttggaactggttttaatacagcgactttaagagatatgaaaaaagac
ctttcttcaattgaagaagaagaatcgccgtttgatgtaaattcacccaagggtaaagat
attcattgggtgaaaccgatcagactttgtgaagtttcattcgggaattggacggatgaa
ggcattcttcgcacacccgtgtttcaaggaatgcgagtagacaaggaggcacaggaagtg
gtgaaagaaatagcaaaggagatttcttctcctgataaaatcctattcaaaaaagagaaa
attacaaaacaacaggtgcttgatttttatcggacggtttcaaaagtcatgttgccttat
atggccggcagacctttgtcccttgttcgttgtccaaatggaagtgagtctcagtgcttt
ttccaaaaacatatctctggaaaagttccggatgctttcaatacctttcccattaaagaa
gagaagggcccgggcatctatctatccattgattcaaagcgaggtctggaagaattagtt
cagctaaatgcctttgaaattcatgcatggaacagtcattgggaaaactatatgagaccc
gatcagattgtgatggatttggatccgggtccgggagtgacctggaaagaagtggttgat
ggggcctttgagcttaaagagatgcttgaagatttgggccttgaatcatttgtaaaactt
actggaggaaaaggtctgcatctacacattcctgtggcaccactttatgattgggatcaa
attaagtccttttctgaagcacttgctttggagcttgtttcccgcaatccaaaaaagtat
gtggccaatatgtctaagaagatcaggcataaaaagatcttcgtggattatttacgaaat
ggttatggagcaaccgcagtggtgccttattctctccgagcgaagcccctaagtgctgtt
gcattgccagtggagtggagtgaactaaaacgaattaaaggtcctcaggaatttacgatt
gataaggcgttaaaaaagatcaaatcacgtaagcgagatccttggactgggatgcttaaa
cttaaacagaagatttcaatcctgacgccggtaaagaaaatggcggcctag
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