Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_017350
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Entry
Pst134EA_017350 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03022
Basal transcription factors
pstr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Pst134EA_017350
09124 Replication and repair
03420 Nucleotide excision repair
Pst134EA_017350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstr03021
]
Pst134EA_017350
03400 DNA repair and recombination proteins [BR:
pstr03400
]
Pst134EA_017350
Transcription machinery [BR:
pstr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Pst134EA_017350
DNA repair and recombination proteins [BR:
pstr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Pst134EA_017350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
72029541
NCBI-ProteinID:
XP_047803988
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All DBs
Position
9:1298086..1300512
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AA seq
474 aa
AA seq
DB search
MASLRSTTSIPANSTRSSTNGDFTTALYAFLNALPKLTLARLYKTPASCLAIFRLLPLIA
RHLVLNLIWSDQPILKSDVLLWSQSKTQLQESLTKLTRLNIIEESSTSDGRTKLTLNSSF
QVNFRRALTGGGNHCSFGVPCNTPINSIVSIDELDKYGTEKWETILHYMVGSRLPTKPSH
NILSLLNQSGLMISSSSDSSSLKITSNGFGFLLEDVNTQLWDILLQYLKMTEANGVDVVD
VLACLFMLGSLELGQEYSFSNWTQTQTQVLQDLVDYGLVLVTAPDRFYPTRLATTLTSSA
PPLVSAERAQEEDGFLVLETNYRVYAYTSNPLQIAVLNLFLSLRYRFPNLVVGAVTRESI
KSALSNGITADQVIIYLHTHAHPQMRKFEPLLPPTVVDQIRLWELEKNRIRAQEGFLYED
FKSSAEFESVIQYSRKLGIILWENSSLRKLFVNYDGHLTLREFVRRGTVSTTNF
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcttcgatcgactaccagcatcccagccaactccactcggtcatccaccaac
ggcgacttcacaaccgcactctatgccttcctgaacgcactaccaaaactaactctagct
agactatacaagacgccggccagctgtctggctatcttcagactacttcctttgatagcg
agacatctcgttcttaatttgatttggtcagatcaacctatactcaagtctgatgttctt
ctttggtctcaatctaaaacacaattacaagaaagtttgactaaattgacccgattgaat
atcattgaagaatccagtacatccgatggaagaactaaattaactctcaactcttcgttt
caagtcaacttcagaagggctttaactggaggaggaaatcattgctcatttggagtgcct
tgtaatacgccaatcaactcgatcgtttctatagacgaattagataaatatgggactgaa
aaatgggagactattcttcattacatggtcggatcacgtttaccgaccaaaccatctcac
aatatcttatctttattaaaccaaagtggactcatgatttcttcttcttcagattcaagc
agtttgaaaatcacttctaatgggtttgggttcttgttggaagatgtgaacactcaacta
tgggatatcttattacaatatctcaaaatgactgaagctaatggggtcgatgtcgtagat
gtattggcttgtttattcatgttgggcagtttagaattaggacaagaatattctttttct
aattggacccaaactcaaacccaagtattacaagacttagtagattacggattagtatta
gtcacagctccagatcgattttatccgactcgattagcgaccactcttacctcttctgcc
cctcctcttgtgtctgctgaacgagctcaagaagaagacggattcttagtgcttgaaaca
aattatcgagtgtacgcctataccagtaatccactccaaatagcagtcttaaatttattc
ctatcgttaagatataggttcccgaacctagtggtcggagcagtaacccgagaatcgatc
aaatcggccctctcaaatggaatcaccgctgatcaagtgatcatttatttacatactcat
gctcatccccaaatgcgtaaattcgaacccctactccctcctacagtcgtcgatcaaatc
cgactgtgggaactcgaaaaaaaccgaattcgagcccaagaagggttcttgtatgaagac
tttaaatcgtcggcggaattcgagtcagttatccaatactcgaggaaacttgggatcatt
ctttgggaaaattctagtttgaggaaacttttcgtgaactatgatgggcatcttaccctt
cgagaattcgtcagacgggggactgtatctactaccaatttttaa
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