Stutzerimonas decontaminans: UIB01_11265
Help
Entry
UIB01_11265 CDS
T03366
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UIB01_11265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_11265 (ligD)
Enzymes [BR:
pstu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UIB01_11265 (ligD)
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UIB01_11265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AHY43020
UniProt:
A0A023WTK2
LinkDB
All DBs
Position
2398146..2400710
Genome browser
AA seq
854 aa
AA seq
DB search
MALDDYQRMRDFAATPEPSGKARRKTGKAQALQYCIQKHDATRLHYDFRLELEGTLKSWA
IPKGPSLDPGVRRLAVHVEDHPLEYATFEGTIPAGHYGAGDVIVWDRGVWIPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTHMDGKEEQWFLIKSRDEAAREEGEYDVVTAEPNSVLS
DRTLVPRKRGAAKARVAEVPAKPVKAPAKKRAPRRQSQAAKLEGAVPDEFPETFKPQLAT
LVDAVPSGDWRYEIKFDGYRMLARVDAGKVALFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGAPDFQALQNAFEAGRSGSILYYLFDVPYLNGMDLRDVPLEQRRAALRE
VLEGSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTEPKGTRTGFGALLLGLHDDSGKLFYAGKVGTGFNQATLKSLHKQLKKLETD
KSPLATAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPADAITHERA
KPASRSSKAEQRQTDPIGSGRIKISSPERIIDPSSGITKIELARFYAQIAPWALPQLRAR
PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGT
IELHSWNAIAPELEHPDRFVLDLDPDPALPWKSMLEATQLTQTLLDEIGLASFLKTSGGK
GIHIVVPLDPVHGWSEVKAFSQAIAKYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWADMTRIRQ
TITAQMRERLGMPA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgatgactaccaacgcatgcgcgacttcgctgccacaccagagccgtctggc
aaggcgcggcgaaagacgggcaaagcccaggcgctgcagtattgcatccagaaacacgac
gccacgcggttgcattacgactttcgcctggagctggagggcacgctgaagagctgggcg
atccccaaaggcccgagcctggaccccggcgtgcgtaggctggcggtgcacgtggaagac
cacccgctggagtacgccacgttcgagggcaccataccggccgggcattacggcgcaggt
gatgtgatcgtctgggatcgcggcgtgtggataccgcagggtgatccgcaggagggttat
cgcaagggcaagctcaagttcagcctcgagggcgagaagctcgccggcagctggaacctg
gtgcgcacccacatggatggcaaggaggagcagtggttcctcatcaagtcccgtgacgag
gccgcgcgcgaggagggcgagtacgacgtcgtcaccgccgagccgaacagcgtgctcagc
gatcgcacgctggtcccacgcaaacgcggagcggccaaggctcgcgttgcggaagtgccg
gccaagccagtcaaggcgccggcaaaaaaacgcgcgccacgcaggcagagccaggcggca
aagctggaaggggccgttccggacgaatttccggaaacattcaagccgcagctggcgacg
ctggtggacgccgtgccgagcggcgactggcgctacgagatcaaattcgacggctaccgc
atgctcgcccgtgtcgacgccggcaaggtcgcgctgttcacccgcaacggccatgactgg
acggcgaagatgccacagcaggccgccgcgcttgccggcctggggcttgaatccggctgg
ctcgacggcgaagtggtggtgccgaacgaggagggcgctccggacttccaggcgttgcag
aatgcgttcgaagccggacgcagtgggagcattctttattacctgttcgacgtgccctat
ctgaacggcatggacctgcgcgatgtgccgctggaacagcgtcgcgcggcgttgcgtgaa
gtgctggaaggcagcgacagcgaattactgcgtttctccgaggatttcaccgagcagccg
gacagcattctggaaagtgcctgccagatgaagctcgaaggcctgatcggcaagcgagca
ggcagctcctatacctccaggcgcagcagcagctgggtcaagatcaagtgcagcaaccgg
caggaattcatcatcgtcggctacaccgagcccaagggcacgcgcaccgggttcggcgcc
ctgttgctggggctgcatgacgacagcggaaagctgttctatgcaggcaaggtcggcaca
ggcttcaatcaggccacgctgaaaagtctgcacaagcagttgaagaagctggaaaccgat
aaaagccctttggccacggcggcacctgctgccgatgtgcggggcgcgcaatggctcaaa
cccgaactgatgtgcgaggttgcctacgcggagatgacccgccaaggcgtggtccgccat
tcggtgttccatggcctgcgctcggacaagcccgccgacgccattacccatgagcgagcc
aagcccgccagtcgtagcagcaaagccgagcagcggcagacagaccccatcggcagcggg
cggatcaagatatccagtcccgagcggatcatcgatcccagcagcggcatcaccaagatc
gaactggcccgcttctacgcgcagatcgccccctgggccctgccgcagctgcgagcgcgc
ccgctggccctggtgcgcgccccggagggcatcaccggcgagctgttcttccagaagcac
gccgacaaactggccatcccgcacatcactcaactcgacccggcgctagacccgaagcac
ggtgcgttactggtgatcgacagcgccgaagcgctggtcggcgccgcgcagatgggcacc
atcgagttacatagctggaatgcgatagcgccagaactggagcacccggatcgcttcgtg
ctcgatctcgacccggacccggcgctgccctggaaaagcatgctcgaagccactcagttg
acccagacattgctggacgagatcggcctggcctcgttcctcaaaaccagcgggggcaaa
ggcatccacattgtcgtgccgctcgatcccgtacacggctggagcgaggtaaaggcgttc
agtcaggccatcgccaagtacctggccaagctgctgccgtcgcatttttcggcggtcagc
gggccgaagaaccgggtcggacgcatcttcatcgactacctgcgcaacagccgtggcgcc
agtacggtcgccccctattcggtgcgtgcccgcgagggtctgccggtttccgtgcccatc
caccgcgaagaactggcggacctcaagggtgccaatctctggaccgtacgcaacctgctg
gagcgtctgcaggagctgggcgacgacgatccctgggcggatatgacgcggatcaggcag
accatcaccgcacagatgcgcgagcgtcttggcatgccggcttaa
DBGET
integrated database retrieval system