KEGG   Pedobacter steynii: BFS30_03940
Entry
BFS30_03940       CDS       T04469                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psty  Pedobacter steynii
Pathway
psty02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psty00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BFS30_03940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psty03021]
    BFS30_03940
Transcription machinery [BR:psty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BFS30_03940
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_ECF GerE Sigma70_r4 Sigma70_r2 HTH_40 HTH_23 HTH_24 HTH_5 HTH_10 HTH_11 DNA_pol3_delta_C PCI HTH_36 CENP-B_N HTH_28 Terminase_5 HTH_Tnp_ISL3
Other DBs
NCBI-ProteinID: AOM76379
UniProt: A0A1D7QCV4
LinkDB
Position
complement(983408..983971)
AA seq 187 aa
MNRYRSFTDPELTGLLENGDHTAFTEIYNRYWKKLFLVAAHKIKDLEEAEEIVQHIFVSL
WNRRDSLKITSSLSAYLSVSVKYRVIKSLDKQYHQQKYTASLGMKGITDDSTQEWLDFLE
LKERLEKLVCTLPEKCRIVYRMSREEGLSQKKIAEELEISEKTVEAHLGKAIKTLRAGLN
QFMTTLL
NT seq 564 nt   +upstreamnt  +downstreamnt
atgaataggtatcgcagttttactgatccggaattaaccggcttgcttgagaacggggat
cataccgcctttactgagatctataaccggtattggaaaaaattgttcctcgttgcggca
cataaaataaaggacctggaagaggcagaagaaattgtacagcatatcttcgtttctctc
tggaacagaagggatagcttaaagattacttccagcctttctgcctacctgtctgtttct
gtaaaataccgggtcatcaagtccctggataaacaataccaccagcaaaaatatactgcc
agtttgggtatgaaaggaattacagacgattccactcaggagtggcttgactttttagaa
ctcaaggaacgtttagagaaacttgtttgtactttacctgaaaaatgccgcatcgtatac
cggatgagcagggaggaaggtttatcccagaaaaaaatagccgaggagctggaaatatct
gaaaagaccgttgaagcccacctaggaaaagccattaaaactttgcgtgcagggctaaat
caatttatgacaaccttattgtaa

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