Pedobacter steynii: BFS30_24365
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Entry
BFS30_24365 CDS
T04469
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psty
Pedobacter steynii
Pathway
psty03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BFS30_24365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psty03400
]
BFS30_24365
Enzymes [BR:
psty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BFS30_24365
DNA repair and recombination proteins [BR:
psty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BFS30_24365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
IDO
DNA_ligase_C
EP400_N
Motif
Other DBs
NCBI-ProteinID:
AOM80018
UniProt:
A0A1D7QMY0
LinkDB
All DBs
Position
complement(5881022..5883781)
Genome browser
AA seq
919 aa
AA seq
DB search
MSLTKYNSKRSKRKTSEPFGGEPSGTELRFVIQKHAASHLHYDFRLEMRGVLKSWAVPKG
PSTDPEVKRLAMMVEDHPYDYRNFEGIIPKGEYGGGTVIVWDEGTYELAEPVDGDLKKQE
TELLHQLHSGKIKFKLKGKKLKGEYALVKAHGRGENGWLLMKLEDKYAKTDDITLKDKSV
LSKKTLEQIAKTSTNIYGKDDPQKNAAIKNKKSSKKTSRTNSGSGSEEEPKTPTSVAKVT
QAVAKKSESIAPAGNRLKSILKKATKQAFYTKVKPMLATLVDKAFDDEGWLYEVKWDGYR
AVSFMNKKQLEIKSRNDKSFNEKYYPVYDALKAWGINAVVDGEIVVVKENGQADFSSMQN
WRSEADGTLLYYLFDILWYDGYDLKDLPLTERKAILSELVPESSILQLSRDFETSGIEFL
EAAKKMGLEGIMAKRKDSHYNAGDRTKDWLKIKANKRQEVVIGGYTTNIDTSKPFSSLLV
GVFEKGKFVYTGKIGTGFNIKQQKEMLQQFKPLIRKTPPFTEEPDVNKPSRFRPNPPKAT
ATWLKPELICEVSFTEMTTDGVMRHPSFEGMRSDKKAKEVVLEKEVETQELIADAKESKY
ITPVGKGERKTLLNPKEETQVKKIGGHELKFTNLSKIFWPKEKYTKRDLINYYYQVAPYM
LPYLKDRPQSLNRHPNGVTGKSFYQKDVTGKVPDWLDTYLYHSEGDKTDKHFLLGNNEAT
LLYMAGLGCIEINPWSSTTKKPDHPTWCVIDLDPDKNSFDQVIEAANVTKAILDDIGVPC
YAKTSGSTGLHVYIPLGNKYTYEQSKEFARVIVTLVHRELPKFTSLERTVKDRNGKMYLD
FLQNRAHATIAAPYSVRPKPGATVSMPLHWDEVKKGMKMSDFTIENAVARLRAEGDIFKP
VLGKGIDLIKIIKQASGKR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcaccaaatacaactccaagagatcgaaacgtaaaacttctgaaccatttggc
ggtgagccgtccggaaccgagttgcgatttgttatccagaaacatgccgcctcccatttg
cattatgactttcgcctggagatgcgtggtgtgctcaaaagctgggcggtaccgaaaggg
ccctccacagatccggaagtaaaacgcctggccatgatggttgaagaccatccttacgat
taccgcaatttcgaaggtatcattccaaaaggtgaatatggcgggggaacagtgattgtg
tgggacgagggcacttatgaactggctgaacctgtggacggtgatttgaaaaagcaggaa
accgaacttttgcatcagctgcattccggcaagattaaattcaaactgaaaggtaaaaaa
ctaaagggggaatacgccttggtaaaagctcatggcagaggagaaaacggttggctgctg
atgaaacttgaggacaagtatgcaaaaacagatgatatcactttaaaagataagtcagtt
ttatcaaaaaagacacttgaacagattgctaaaacttcaaccaatatctatggaaaagat
gaccctcaaaagaacgccgctatcaaaaataagaagtcttctaaaaaaacgtctcgcacc
aatagcggctccggcagcgaggaagaaccaaaaactccgacatctgttgcaaaggttaca
caagctgtagcaaagaaaagtgaaagtattgcacctgccggaaaccggttaaagtcaata
cttaaaaaagcgacgaagcaagcgttttacaccaaggtaaagccaatgcttgcgaccctt
gtagacaaagcatttgacgacgaaggctggctttacgaagtgaagtgggatggataccgt
gcagtctcctttatgaataaaaagcaattggagatcaaatccaggaatgacaagtccttc
aatgagaagtactacccggtatacgatgcattaaaagcctggggtatcaacgcggttgta
gatggagagattgtcgttgtaaaagaaaacgggcaagcggacttcagctctatgcagaac
tggcgcagcgaagcagacggcacgttgctgtattatctttttgatattctctggtatgat
gggtatgatttaaaagatcttcctctaactgaacgaaaggcgatactttctgaactggtt
cctgaaagttccatcttacagctaagccgggactttgaaacttcaggtattgagttcctg
gaagctgcaaagaagatgggcctggagggaatcatggcaaagcgtaaggatagccattac
aatgcaggtgaccggacaaaggactggctgaaaataaaagccaataagcgtcaggaagtg
gtaatcggcggatacaccaccaatatcgacaccagcaagccatttagctctttactggta
ggtgtatttgaaaaagggaaattcgtctataccggcaagatcggcaccgggtttaacatc
aaacagcaaaaggaaatgctgcagcagttcaaaccattgattagaaaaacgccccctttc
acagaagagccggatgtgaacaagcccagccggttccggcccaacccgccaaaggccacc
gccacctggctaaaaccggaactcatctgtgaggttagctttaccgaaatgaccacggac
ggcgttatgcgccacccgtcttttgaagggatgcgttcagacaaaaaagcaaaggaagta
gtgcttgaaaaagaagtcgaaactcaggagttgatcgccgatgcaaaggaaagcaaatac
ataactccggtaggcaaaggagaaagaaagactttgctcaatcccaaagaagaaacccag
gtcaaaaaaataggtggccatgaattgaagttcactaacctgagcaagatattctggccg
aaggaaaagtataccaaacgcgacctgatcaattattattatcaggtggcaccatatatg
cttccgtatttaaaagacagaccgcaatcacttaaccgccatcccaatggcgttaccggt
aaaagcttttaccaaaaggatgtcaccggcaaagtgccggactggttggatacttatttg
taccatagcgaaggtgataagacagataaacacttcctgcttggcaataatgaagccaca
ttgctgtatatggccggtcttggctgtatagaaataaatccatggagcagtaccacgaaa
aaaccggatcatcccacttggtgtgtcattgatcttgaccccgataagaactccttcgac
caggtaattgaggcagcaaatgtcacgaaggccatcctcgatgatataggcgttccctgt
tacgcaaaaacgagtgggtcaaccggtttgcatgtgtatattcctttgggtaataaatac
acctatgagcaaagcaaagaatttgcaagggtcattgtgaccctggtgcatcgtgaatta
cccaagtttaccagcctggaaagaacggtaaaggatcggaatggtaagatgtatctggac
ttcctgcagaaccgtgcacatgcaactattgcggcgccatattcagtgaggccaaagccc
ggtgccacagtatcgatgcctctgcattgggatgaagtgaaaaagggaatgaagatgtct
gattttacgattgaaaatgctgtagcaaggcttcgggctgaaggcgatatctttaaaccg
gtattgggaaagggtattgatctaatcaaaattatcaaacaggcgtcaggaaaaagataa
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