Pelolinea submarina: Pelsub_P2030
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Entry
Pelsub_P2030 CDS
T05783
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psub
Pelolinea submarina
Pathway
psub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pelsub_P2030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psub03400
]
Pelsub_P2030
Enzymes [BR:
psub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pelsub_P2030
DNA repair and recombination proteins [BR:
psub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pelsub_P2030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBB48799
LinkDB
All DBs
Position
complement(2372605..2375997)
Genome browser
AA seq
1130 aa
AA seq
DB search
MTSEQLIRFKELPGFNDLLEQVEGGTRQIPISLPRSVRLPFMAALQRDTQKPLLFITSKS
DRLQSMYEEFSFWAEGNRNFIFAEPTPLFYEKINWSRDTRSDRMETLVALAQTFLPARKS
EDVPQVIFTSVKSLMTRTIPRRDFLLACATLKVGSQMQVDALCRKWVDIGYTTAELVTSA
GQFSRRGGLVDIWPTNLEHPVRVDFFGDEVDSIRSFDPATQRSIEMINSVFIPPAGELVG
EHSNLNEDPSQPLVEFNIPLAYKNPGSLLDYLPKGSIILLDNEASLEVTSEEIEDQALRL
RKDAVEMNAVPADFPLPYTTWSELSDNMTRFSIIDLGFPLGDEIHPLSGAFSPGPRFGSH
LPGLFEFINKTVNQGNPVTVVSKQVDRLKEVGRGEAAGLSESELLTYIDGSLNAGWEVRY
PKGTISYLLTDSEIFGWERPRPRKQRAQSYSGPEVSYADLKPGDWVVHIDYGIGRFAGLV
HRSIEGVERDFLLIKYAEDDQLFVPVHQADRLSLYVGPDERGPRLTRLGTKDWVTLKDKV
KEAVQEVAVDLLELYAKRQTVEGYAYRADTEWQRILELSFPYTETPDQARAIEEVKHDME
RARPMDRLLCGDVGYGKTEVALRAAFKAVMDGRQVAMLVPTTVLAQQHFESFRTRLAPFP
VKVEMLSRFRSPSEQAQILLDLEAGDVDIIIGTHRLLQDDVLFKDLGLLIIDEEQRFGVT
HKEYFKKMRTEIDVLTLTATPIPRTLYMALSGIRDISNINTPPSDRLPIQTHIGGYDPQL
VRNAIIREIDRGGQVFFVHNRVQTIGAMANHLRSLVPEARLGIAHGQMKEHELAEVMHKF
TSGEVDVLVSTSIIESGLDIPNANTLIVDRGDTFGLSQLYQLRGRVGRGASRAYAYFFHH
RKKLPTPEGLERLETLAENTQLGAGYSIAMRDLEMRGAGDLLGTVQHGHIAAIGFHLYTR
LLSEAVNEVKERGGLYETAKPELPYRSIRPLVAVELPLSVGIPQEYLPDEKLRLQLYRRI
ADTINQNEIEKIKDEFLDRFGPLPEDTQNLFWQLGIKLKAEQAGLASISIEGDQIVLRYP
ALPEGLKVRDLADLGNDARRGKNAYWLPILGEGIWQERLDALLTRLVELN
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgagcaattaatccgatttaaagaacttcccggtttcaatgatttactggaa
caggtggaaggtggaaccaggcagattcccatcagtctgccgcgttccgtgcgactgcca
ttcatggcagcgcttcagcgagatacccaaaaaccgctgctgtttatcacttccaagtcc
gaccggctgcaatccatgtatgaagaattcagcttctgggcggaagggaaccgtaatttc
atctttgccgaacctaccccgttattctacgaaaaaataaattggagccgcgatacgcgc
agcgaccgcatggagacactggtggcactggcgcaaacattcctgccggcgcgcaagagc
gaagacgtgccccaggtaatttttacctcggtcaaatcgctgatgactcggaccatccca
cgacgggacttccttttggcttgtgccacactcaaggtcggcagccagatgcaggtggac
gccttgtgccgcaagtgggtggatatcggctacaccaccgccgaattggtgaccagcgcg
gggcaattttcgcggcggggcggtttggtagatatatggccgacaaacctggaacatccg
gtgcgcgtggattttttcggggacgaggtggattccatccgcagcttcgacccggccacg
cagcgctccatcgaaatgatcaattcggtgtttattccaccggccggcgaactggtcggc
gagcattccaatttaaatgaagatcccagccaacctttagtcgaattcaacatccccctg
gcttacaagaatccggggtcattattggactacctgcccaaaggttccatcatcctactg
gacaatgaagcttcactggaagtaacctccgaggagattgaagaccaagcgttacggctg
cgtaaggacgcggtggagatgaatgccgtgccggcggatttcccactgccatacaccacc
tggtccgaactgagcgataacatgacgcgcttcagcattattgacctgggtttcccgtta
ggagatgaaatccacccattatccggcgcgttttcgcccgggccgcgttttggcagccac
ttgccgggattgtttgaatttatcaacaagactgtcaatcagggaaatccggtgaccgtt
gtgtccaaacaggtcgaccggttgaaggaagtcgggcgaggcgaagcggccggtttaagc
gaatccgaattgctgacttatatcgacggcagtctgaatgcgggctgggaagtacggtac
cccaagggaaccatcagctacctgctaaccgattcggaaatcttcggatgggagcgcccg
cggccgcgcaaacaaagagcgcagagttattccggaccggaagtctcttacgcggacctg
aagccgggcgattgggtagtgcacatcgattacggcatcggccgttttgccgggctggtc
catcgctcgattgagggcgtggaacgggatttcctgctgatcaagtacgcggaagacgac
cagctattcgtgccggtacatcaggctgatcgcttgagcttgtacgtagggccggatgaa
cgcggcccgcggctaacccggttgggcaccaaagattgggtgacgctcaaggataaggtc
aaagaggcggttcaggaagtggccgttgatctgttggagttgtatgccaaacgacagacg
gtggaaggctatgcttaccgcgcagacaccgaatggcagcgcatcctggaattgagtttc
ccttacactgagactcccgaccaggccagggccatcgaggaagtaaaacatgacatggaa
cgggcgcggccaatggaccggttgttgtgcggagacgttggctacggcaagacggaggtc
gcgctgcgggcagctttcaaggccgtcatggacggccgccaggtggccatgctggtgccg
actacggtgctggcgcagcagcatttcgaatctttccggacgcgcctggcacctttcccg
gtcaaggtggaaatgctatcgcgtttccgcagcccatccgagcaggcgcaaatcctgctg
gatttagaagcgggcgatgtggatatcatcatcggcactcaccgtttacttcaggatgac
gtgctctttaaagacctgggattgttgattatcgatgaagaacagcgtttcggtgtgacg
cataaggagtacttcaaaaagatgcgcacggaaatcgatgtgttgacactgactgcgaca
cccatcccgcgcacgctgtacatggcgctgtcgggtatccgcgatatttccaatattaat
acgccgccctccgaccggctgccgatccagacgcatattggcgggtatgatccgcaattg
gtccgcaatgccatcatccgcgaaattgaccgcggcggacaggtgttctttgtccataac
cgcgtgcagaccatcggcgcgatggcgaatcacctgcgcagcctggtgccggaagcacgg
ttggggattgcgcacggacagatgaaagagcacgaattggcggaagtgatgcataagttc
acttccggcgaagtggacgtgctggtttccacctccattattgaatccggtttggatatc
cccaatgccaataccctgattgtagatcgcggcgatacttttggattatcacagctatac
caactacgcggacgggtgggacgcggcgcttcgcgcgcctacgcgtatttcttccaccac
cgcaagaaactacccacgccggaaggtttggaacgattggaaaccctggcggaaaatacc
caactgggggcaggttactccatcgccatgcgtgacctggaaatgcgcggggcgggcgac
ctgctgggaaccgtgcagcacgggcacattgccgcaataggttttcatttgtatacccgg
ctgctttccgaagcggtgaacgaggttaaggaacgcggcggattatatgaaaccgcgaaa
ccggagctgccttatcgcagtatccgtccgctggtggcggtggaattgccgctctcggta
ggcatcccccaagaatacctacctgatgaaaagctgcgattacagctttaccgccggatt
gctgatacgattaaccaaaatgaaatcgagaaaattaaagacgagtttctcgatcgtttc
ggcccgctgccggaggacacgcaaaacctgttttggcagctgggtatcaaattgaaagcg
gagcaggctggattggcatccatctcgatagaaggggatcagattgtgctgcgctatccg
gcgctgccggaaggtttgaaagtgcgcgatctggcggatttaggcaatgacgcacgccgc
ggtaagaatgcctattggctgcctattctgggtgaggggatttggcaggaacgcctggat
gccttgctgaccaggctggttgaactgaattag
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