Phytohabitans suffuscus: Psuf_081850
Help
Entry
Psuf_081850 CDS
T06545
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psuf_081850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psuu03400
]
Psuf_081850
Enzymes [BR:
psuu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psuf_081850
DNA repair and recombination proteins [BR:
psuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psuf_081850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Mucin
MazE-like
Sporozoite_P67
Motif
Other DBs
NCBI-ProteinID:
BCB90872
UniProt:
A0A6F8YXQ0
LinkDB
All DBs
Position
8757492..8759318
Genome browser
AA seq
608 aa
AA seq
DB search
MATRAKPTKAERNDAERKRAGRPKANPSRRGETLGEYRRKRDFARTPEPSGDGGRPGPGA
PRFVVQRHRARQLHYDFRLEIDGVLVSWAVPKGPTLDPKARRAAFHVEDHPVEYIDFEGI
IPSGQYGGGDVIVWDAGTWRPAAGVDDPGRAVGGGELHLDLYGEKLRGRFVLVRTGGDGA
RERWLLLHKRDEFAEGGWDPEDHPRSVLSGRTNDEVKADPHREWRSDRPAATAAVPLKAT
TAGKTTTATTAGKTATTAGKTATTASKAATTGKATTARRAAPKTTRRKAATETAGDEAMR
ELDGLRASGGVWHVFGREVKVTNLDKVLFAGRPGEEPVTKRELLRYTARIAPTALPYLRR
RAFNMHRFPNGAQTKGFWHKELPHHAPDWLPRWDNPDADPGEARTYLVVDEPAALVWAAN
FGALEWHAWTSTVDRPDRPTWALIDLDPGAATTWDDLLALARLHRTALEHVGARSRPKLT
GRRGIQIWVPIARGPDFAATRAWVEKLSRTVGAVVPDLVSWKWEVRERAGRARLDFTQNA
VNKTLVAPYSPRPAPGAPVSAPVDWDELDDPDLRPDAFTIRSIVDRVAERGDLFRDLLDR
PRRLPRLD
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggctaccagggccaagccgaccaaggccgagcggaatgacgccgagcggaaaagggcc
gggagacccaaggcgaacccatcgcggcgtggggagacgctcggcgagtaccggcgcaag
cgcgacttcgcgcgcacgcccgagccgtccggcgacggtggccgcccggggcccggcgcg
ccgcgcttcgtcgtacagcggcaccgggcgcggcagctgcactacgacttccggctggag
atcgacggtgtgctggtgagctgggcggtgccgaaggggccgacgctcgacccgaaggcg
cggcgggccgccttccacgtggaggaccaccccgtcgagtacatcgacttcgaggggatc
atcccgtccggccagtacggcggcggcgatgtcatcgtgtgggacgccggcacgtggcgg
ccggccgccggcgtcgacgacccggggcgggcggtgggcggcggcgagctgcacctggac
ctgtacggggagaagctgcgcggccgcttcgtgctggtgcgcaccggcggggacggcgcc
cgggagcggtggctgctgctgcacaagcgggacgagttcgccgagggcggctgggacccg
gaggaccacccgcgttcggtgctgagcggccgcacgaacgacgaggtcaaggccgacccg
caccgcgagtggcgctcggaccgtcccgccgcgaccgcagccgtgcccctcaaggccacc
accgccggcaagaccacaaccgccaccaccgccggcaagaccgccaccaccgccggcaag
accgcgaccaccgccagcaaggccgcgaccaccggcaaagccaccaccgcgcgcagagcc
gccccgaagacgacccgccgcaaggccgccaccgagacagccggtgacgaagcgatgcgc
gagctggacgggctgcgcgcgtccggcggcgtgtggcacgtgttcggccgcgaggtcaag
gtgaccaacctcgacaaggtgctgtttgcgggccggccgggcgaggagccggtcaccaag
cgcgagctgctgcggtacacggcccggatcgcgcccaccgcgctgccgtacctgcggcgg
cgggccttcaacatgcaccgcttcccgaacggcgcgcagacgaagggcttctggcacaag
gagctgccgcaccacgcgccggactggctgccccgctgggacaacccggacgccgacccg
ggcgaggcgcggacgtacctggtcgtcgacgagccggccgcgctggtgtgggcggccaac
ttcggcgcgctggagtggcacgcctggacctccaccgtggaccgcccggaccgtcctacg
tgggcgctcatcgacctcgacccgggcgcggccaccacgtgggacgacctgctcgcgctg
gcccgcctgcaccgcaccgccctggagcacgtcggcgcccgctcccggccgaagctcacc
ggccggcgcggcatccagatctgggtgccgatcgcccggggaccggacttcgcggccacc
cgcgcctgggtggagaagctgtcgcgcaccgtcggcgcggtcgtgccggacctggtcagc
tggaagtgggaggtgcgggagcgggcgggccgggcccggctggacttcacccagaacgcg
gtcaacaagaccctcgtcgccccgtacagcccgcggcccgcgcccggcgccccggtgtcg
gcgccggtcgactgggacgagctcgacgaccccgacctgcgcccggacgccttcacgatc
cggtccatcgtggaccgtgtggccgagcgcggcgacctcttccgcgacctgctcgaccgc
ccgcgcaggctcccccgcctcgactga
DBGET
integrated database retrieval system
