Pseudoxanthomonas suwonensis J1: WQ53_01420
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Entry
WQ53_01420 CDS
T04241
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WQ53_01420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psuw03400
]
WQ53_01420
Enzymes [BR:
psuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WQ53_01420
DNA repair and recombination proteins [BR:
psuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WQ53_01420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AKC85623
UniProt:
A0A0E3YYX3
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All DBs
Position
333033..336569
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AA seq
1178 aa
AA seq
DB search
MPSASSSPVSPAPPLPKRGQARAWWRAPASPSALAWHLAQAARAHPGPLLFVARDNQSAH
QVESDLHTLLGDDASLPVVPFPDWETLPYDRFSPHPDIISQRLAALQRLPQLERGIVVVP
VQTLLQRLPPLRYIAGGSFDLATGQRLDLDAEKRRLESAGYRNVPQVLDPGDFAVRGGLL
DVYPMGADAPLRIELLDDEIDSIRRFDPESQRSLDRIDAVRMLPGRELPMDEASIARVLD
ALRERFDVDTRRSALYQDLKAGLAPAGIEYYLPLFFPPTRDGQDTTATLFDYLPVSALPV
LADGANGAADAFWQQTRNRHEQRRHDVEHPVLAPEELYLPPDALRERLNLGIRVEVCGAE
HARAAEATPLGDQPAPSLPVAGRDHHVAGEALRSFLGSYPGRVLVAADSPGRREALLEVL
QAAELRPEVLPDFPAFLNRRPGGAGVGRGDAVRFALAVAPLEDGFAIDDPAFVVLTERQL
FPERATQPRRARRAGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLVAMDIGGMPGEFL
DIEYAKGDRLYVPVAQLHLVSRYSGASPETAPLHSLGGEQWTKAKRKAQEKVRDVAAELL
EIQARRQARAGLALDIDRPMYESFAAGFPFEETPDQHASIEAVLRDLQSSQPMDRVVCGD
VGFGKTEVAVRAAFAAASAGRQVAVLVPTTLLAEQHYRNFHDRFADWPLKVEVLSRFKTK
KEIELELQKVSEGGIDVIVGTHRLLQADVKFKDLGLVIVDEEQRFGVRQKEALKALRANV
HLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFVVPWDDAQLREAFQRELARG
GQLYFLHNDVESIGRMQRQLAELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTT
IIESGIDIPNANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPPDRRSMTPDAEK
RLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQ
GKLPDLDAGQEARGAEVELHVPALIPEDYLPDVHARLTLYKRISSARDSDALRELQVEMI
DRFGLLPDPVKHLFAVAELKLQANALGIRKLELGESGGRIVFEAKPNVDPMSVIRMIQQQ
PKLYAMDGPDKLRIRHPLPEPGDRFNAARALLTTLAPG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcttcctcctcccccgtgtcccccgcccccccgttgcccaagcgcggccag
gcccgcgcctggtggcgcgcacccgcatcgccctcggccctggcctggcacctggcccag
gccgcgcgcgcgcatcccggcccgctgctgttcgtggcccgcgacaaccagtccgcgcac
caggtcgagtcggacctgcacaccctgctaggcgacgacgcctcgctgccggtggtgccg
ttcccggactgggagaccctgccctacgaccgcttcagcccgcacccggacatcatcagc
cagcgcctggccgcgctgcagcggctgccgcagctcgagcgcgggatcgtggtggtgccg
gtgcagaccctgctgcagcggctgccgccgctgcgctacatcgccggcggcagcttcgac
ctggccaccggccagcgcctggacctggacgccgagaagcggcggctggaaagcgccggc
taccgcaacgtgccgcaggtgctggacccgggcgacttcgccgtgcgcggcggcctgctc
gacgtgtatccgatgggcgccgacgcgccgctgcggatcgaactgctggacgacgagatc
gactcgatccgccgcttcgatccggaaagccagcgctcgctcgaccgcatcgacgcggtg
cggatgctgcccggccgcgagctgccgatggacgaggccagcattgcccgcgtgctcgac
gcgctgcgcgaacgcttcgacgtcgacacccggcgcagtgcgctgtaccaggacctgaaa
gccgggctggcaccggccggcatcgagtactacctgccgctgttcttcccgccgacgcgc
gacggacaggatacgaccgccacgctgttcgactacctgccggtcagcgcgctgccggtg
ctggccgacggcgccaatggcgccgccgacgcgttctggcagcagacccgcaaccgccat
gagcagcgccgccacgacgtcgagcatccggtgctcgcgcccgaagagttgtacctgccg
cccgatgcgctgcgcgagcggctgaacctgggcatccgcgtcgaggtctgcggcgcggag
cacgcgcgcgccgccgaggccacgccgctgggcgaccagccggcgccatcgctgccggtg
gccggccgcgaccaccacgtcgccggcgaggcgttgcgctcgttcctgggcagctacccg
ggacgggtgctggtggccgccgattcgccggggcggcgcgaggcattgctggaggtgctg
caggcggcggagctgcggccggaggtactgcccgatttccctgcgttcctcaaccgtcgt
cccggcggcgcgggggttgggcgcggcgacgcggtgcggttcgcgctggccgtcgccccg
ctggaagacggctttgcgatcgacgatcccgcgttcgtagtcctcaccgagcgccagctg
ttccccgagcgcgccacccagccgcgccgcgcccgccgcgccgggcgcgaacccgaagcg
atcatccgcgacctgggcgagctcaccgaaggcgcgccgattgtccacgaggaccacggc
gtgggccgttatcggggactcgtcgcgatggacatcggcggcatgcccggcgagttcctc
gacatcgagtacgccaagggcgaccgcctgtacgtgccggtggcgcagctgcacctggtc
agccgctactccggcgcctcgccggagaccgcgccgctgcattcgctcggcggcgagcag
tggaccaaggccaagcgcaaggcgcaggagaaggtccgcgacgtggctgccgaactgctg
gagatccaggcccgccggcaggcccgcgccggcctggccctggacatcgaccggccgatg
tacgagagcttcgccgccggcttcccgttcgaggagacccccgaccagcacgcctcgatc
gaggcggtgctgcgcgacctgcagtccagccagccgatggaccgggtggtgtgcggcgac
gtcggcttcggcaagaccgaggtcgcggtgcgcgccgccttcgccgcggccagcgccggc
cgccaggtcgcggtgctggtgccgaccaccctgctggccgagcagcactatcgcaacttc
cacgaccgcttcgccgactggccgctgaaggtcgaggtgctgtcgcgcttcaagaccaag
aaggagatcgaactcgagctgcagaaggtgagcgaaggcgggatcgacgtgatcgtcggc
acccaccgcctgctgcaggcggacgtgaagttcaaggacctgggcctggtcatcgtcgac
gaggagcagcgcttcggcgtgcgccagaaggaggcgctgaaggcgctgcgcgccaacgtg
cacctgctgaccctcaccgctaccccgatcccgcgcaccctgaacatggccatggccggg
ctgcgcgacctgtcgatcatcgccactccgccgcccaaccggctggcggtgcagaccttc
gtcgtgccctgggacgatgcgcagctgcgcgaggcgttccagcgcgaactggcccgcggc
ggccagctgtacttcctgcacaacgacgtggagagcatcggccgcatgcagcgccagctg
gccgaactggtgccggaggcgcgcatcggcatcgcccacgggcagatgcccgagcgcgag
ctggaacgggtgatgctcgacttccagaagcagcgcttcaacgtgctgctgtcgaccacg
atcatcgaatcgggcatcgacatccccaacgccaataccatcgtcatcaaccgcgccgac
cgcttcggcctggcccagctgcaccagctgcgcggacgcgtcggccgctcgcatcaccgc
gcctacgcctacctactggtgccgccggaccggcgctcgatgacccccgacgcggagaag
cggctggaagcgatcgcctcgatggacgaactgggcgccggcttcaccctggccacccac
gacctggagatccgcggcgccggcgagctgctgggcgaggaccagagcgggcagatggcc
gaggtcggcttcagcctgtacaccgagctgctcgagcgcgcggtgcgcagcatccgccag
ggcaagctgccggacctggacgccggccaggaggcgcgcggcgccgaggtcgagctgcac
gtgccggcgctgatcccggaggactacctgccggacgtgcacgcccgcctgaccctgtac
aagcggatcagttcggcgcgcgacagtgacgcgctgcgcgagctgcaggtggagatgatc
gaccgcttcggcctgctgccggacccggtcaagcacctgttcgcggtggccgagctgaag
ctgcaggccaacgcgctgggcatccgcaagctggagctgggcgagagcggcggccggatc
gtgttcgaggccaagccgaacgtcgacccgatgtcggtgatccggatgatccagcagcag
ccgaagctgtacgcgatggacggcccggacaagctgcggatccgccatccgctgccggag
ccgggtgaccgcttcaacgctgcgcgcgcgctgctgacgacgctggcgccgggctga
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