Pseudoxanthomonas suwonensis J1: WQ53_07800
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Entry
WQ53_07800 CDS
T04241
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WQ53_07800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psuw03400
]
WQ53_07800
Enzymes [BR:
psuw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WQ53_07800
DNA repair and recombination proteins [BR:
psuw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WQ53_07800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKC86678
UniProt:
A0A0E3Z1B7
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Position
1854732..1857347
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AA seq
871 aa
AA seq
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MSLRDYARKRDFGATPEPQGAARRRSADRRPVFVVQLHHASHRHYDFRLEADGVLKSWAV
PKGPSLRPGEKRLAVQVEDHPLDYADFEGDIPAGHYGAGHVDLFDRGTWAIDGDPLAAIA
KGKLDFELHGDKLNGAWKLVRTGLQGRQPQWLLIKRSDAHAADVEADDLVDGAAPKRPRA
TRTATTAPPVGARLAGDPTPPAKATLNATSPKRRTSTTTRPSPRKQDATWRKRALALPGA
RARLHPPGFAPELCTLRAAPPAGDGWLHEIKWDGYRLLADLVEGEVRLRSRNDLDWTARV
PEVTRAVEALPVSDARLDGELVVLDAQGHSDFSALQRVLEGSSRQPLRYLLFDLPGLAGV
DLARAPLAGRKALLQRLLGKRAGVLAYSDHVVGHGAEVLAASGRAGFEGIVSKRVDAPYA
GGRGQDWIKTKHEQGDEFVVVGYTAPKGARGHFGSLLLGRPEAGGLRYVGRVGSGFGDEA
LRELYRRMRPLAQGQASVALPAHVPFSARSVHWIKPELVVEVAFRGWAKEGLLRQASYRR
LREDKAMAELTASSDRDARTGVAASKRRTRSAASDDGKRGEAPPQGAEVAISHPERVVYA
GDGITKGHVAAYYRAVARWILPELARRPLSLLRCPDGTGGECFFQKHLGRGFGPQVHALP
LRQKSGVEDYLYLDDEAGLLQLVQMNAIEFHPWGATVDDPERADRLVFDLDPGEGVSWKQ
VRDAAREVRARLREAGLDSFLRMSGGKGLHVVVPLAPAVPWEQARDFCEAFARAMAAHAP
ERYVASMRKDLRGGRIFLDWLRNTRGATSVCGWSLRAREHATVAMPLRWEELAKIASPGA
FTLDKALQRAARLRKDPWDGIGAIRQALPTA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgcgcgactacgcccgcaagcgcgacttcggcgccaccccggaaccgcagggg
gcggcgcgccggcgcagtgcggaccggcgcccggtcttcgtggtccagctgcaccacgcc
tcgcaccggcactacgacttccgcctggaggccgacggcgtgctcaagagctgggcggtg
cccaagggcccgtcgctgcggccgggggagaagcggctggcggtgcaggtcgaggaccat
ccgctggactacgccgacttcgagggcgacatccccgccggccactacggcgccggccac
gtcgacctcttcgaccgcggcacctgggccatcgatggcgacccgctggcggcgatcgcc
aagggcaagctcgacttcgaactgcacggcgacaagctcaacggcgcctggaagctggtg
cgcaccggcctgcagggccggcagccgcagtggctgctgatcaagcgtagcgacgcacac
gccgcggacgtggaggcggacgacctggtcgatggcgccgcgccgaagcgtccccgcgcc
acccgcacggccacgaccgctccccctgtcggagcccgtcttgcgggcgaccccacgccc
ccggccaaagcaacgctcaacgcgacctcgccgaaacgacgcacgtccaccaccacccgc
ccatccccacgcaagcaggacgccacctggcgcaagcgcgccctggccctgcccggcgcg
cgcgcgcggctgcacccgcccggcttcgccccggaactgtgcaccctgcgcgcagcgccg
ccggccggcgacggctggctgcacgagatcaagtgggacggttaccgcctgctcgccgac
ctggtcgaaggcgaagtccggctgcgctcgcgcaacgatctggactggaccgcgcgggtg
cccgaggtcacccgcgcggtcgaggcgctgccggtctccgacgcacgcctggacggcgag
ctggtggtgcttgacgcacagggccacagcgatttctccgcgctgcagcgggtgctcgaa
ggcagttcgcggcagccgctgcgctacctgctgttcgacctgccgggcctggccggcgtg
gacctggcgcgcgcgccgctggccgggcgcaaggcgctgctgcagcggctgctaggcaag
cgtgccggcgtgctcgcctacagcgaccacgtcgtcggccacggcgccgaggtgctggcc
gccagcggccgcgccggcttcgagggcatcgtcagcaagcgcgtcgacgcgccatatgcc
ggcggccgtggccaggactggatcaagaccaagcacgagcagggcgacgagttcgtggtg
gtcggctacaccgcgccgaagggcgcgcgcggccacttcggttcgctgctgctgggcagg
cccgaagctggcggcctgcgctacgtcggccgcgtcggcagcggcttcggcgacgaggcg
ctgcgcgagctgtaccgccggatgcggccgctggcgcaggggcaggcgagcgtggcgcta
ccggcgcacgtaccgttcagcgcgcgcagcgtgcactggatcaaacccgaactggtggtc
gaggtcgcgttccgtggctgggccaaggaaggcctgctgcgccaggccagctaccggcgg
ctgcgcgaggacaaggccatggccgagttgaccgcttcctccgatcgcgacgcccgcacc
ggcgtcgccgcttccaagcgcaggacgcgcagtgccgccagcgacgacggcaagcgcggc
gaggcaccgccgcagggcgcagaagtggcgatcagccatccggaacgcgtcgtctacgcc
ggcgacggcatcaccaagggccacgtcgccgcctattaccgcgcggtggcgcgctggatc
ctgcccgagctggcgcggcggccgctgtcgctgctgcgctgtcccgacggcaccggcggc
gaatgcttcttccagaagcacctcggtcgcggcttcggcccgcaggtgcacgcgctgccg
ctgcggcagaagagcggcgtggaggactacctctacctcgatgacgaggccgggctgctg
cagctggtgcagatgaacgcgatcgagttccacccctggggcgcgaccgtggacgatccc
gagcgcgccgaccggctggtgttcgacctggacccgggcgagggcgtgtcgtggaagcag
gtgcgcgacgccgcccgcgaggtccgcgcccggctgcgcgaggccgggctggacagcttc
ctgcgcatgagcggcggcaagggcctgcacgtggtggtgccgctggccccggccgtgccc
tgggaacaggcgcgcgatttctgcgaggccttcgcccgggccatggccgcgcacgcgccg
gagcgctacgtggccagcatgcgcaaggacctgcgtggcggccgcatcttcctggactgg
ctgcgcaacacccgcggcgcgaccagcgtgtgcggctggtcgctgcgcgcacgcgaacac
gccacggtggccatgccgctgcgctgggaggagctggcgaagatcgcctcgcccggcgcc
ttcaccctggacaaggcactgcagcgcgccgcacgactgcgcaaggatccgtgggacggg
atcggcgcgatccggcaggcgctgcccacggcctga
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