KEGG   Pseudoxanthomonas suwonensis J1: WQ53_07800
Entry
WQ53_07800        CDS       T04241                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psuw  Pseudoxanthomonas suwonensis J1
Pathway
psuw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psuw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WQ53_07800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psuw03400]
    WQ53_07800
Enzymes [BR:psuw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WQ53_07800
DNA repair and recombination proteins [BR:psuw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WQ53_07800
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AKC86678
UniProt: A0A0E3Z1B7
LinkDB
Position
1854732..1857347
AA seq 871 aa
MSLRDYARKRDFGATPEPQGAARRRSADRRPVFVVQLHHASHRHYDFRLEADGVLKSWAV
PKGPSLRPGEKRLAVQVEDHPLDYADFEGDIPAGHYGAGHVDLFDRGTWAIDGDPLAAIA
KGKLDFELHGDKLNGAWKLVRTGLQGRQPQWLLIKRSDAHAADVEADDLVDGAAPKRPRA
TRTATTAPPVGARLAGDPTPPAKATLNATSPKRRTSTTTRPSPRKQDATWRKRALALPGA
RARLHPPGFAPELCTLRAAPPAGDGWLHEIKWDGYRLLADLVEGEVRLRSRNDLDWTARV
PEVTRAVEALPVSDARLDGELVVLDAQGHSDFSALQRVLEGSSRQPLRYLLFDLPGLAGV
DLARAPLAGRKALLQRLLGKRAGVLAYSDHVVGHGAEVLAASGRAGFEGIVSKRVDAPYA
GGRGQDWIKTKHEQGDEFVVVGYTAPKGARGHFGSLLLGRPEAGGLRYVGRVGSGFGDEA
LRELYRRMRPLAQGQASVALPAHVPFSARSVHWIKPELVVEVAFRGWAKEGLLRQASYRR
LREDKAMAELTASSDRDARTGVAASKRRTRSAASDDGKRGEAPPQGAEVAISHPERVVYA
GDGITKGHVAAYYRAVARWILPELARRPLSLLRCPDGTGGECFFQKHLGRGFGPQVHALP
LRQKSGVEDYLYLDDEAGLLQLVQMNAIEFHPWGATVDDPERADRLVFDLDPGEGVSWKQ
VRDAAREVRARLREAGLDSFLRMSGGKGLHVVVPLAPAVPWEQARDFCEAFARAMAAHAP
ERYVASMRKDLRGGRIFLDWLRNTRGATSVCGWSLRAREHATVAMPLRWEELAKIASPGA
FTLDKALQRAARLRKDPWDGIGAIRQALPTA
NT seq 2616 nt   +upstreamnt  +downstreamnt
gtgtcgctgcgcgactacgcccgcaagcgcgacttcggcgccaccccggaaccgcagggg
gcggcgcgccggcgcagtgcggaccggcgcccggtcttcgtggtccagctgcaccacgcc
tcgcaccggcactacgacttccgcctggaggccgacggcgtgctcaagagctgggcggtg
cccaagggcccgtcgctgcggccgggggagaagcggctggcggtgcaggtcgaggaccat
ccgctggactacgccgacttcgagggcgacatccccgccggccactacggcgccggccac
gtcgacctcttcgaccgcggcacctgggccatcgatggcgacccgctggcggcgatcgcc
aagggcaagctcgacttcgaactgcacggcgacaagctcaacggcgcctggaagctggtg
cgcaccggcctgcagggccggcagccgcagtggctgctgatcaagcgtagcgacgcacac
gccgcggacgtggaggcggacgacctggtcgatggcgccgcgccgaagcgtccccgcgcc
acccgcacggccacgaccgctccccctgtcggagcccgtcttgcgggcgaccccacgccc
ccggccaaagcaacgctcaacgcgacctcgccgaaacgacgcacgtccaccaccacccgc
ccatccccacgcaagcaggacgccacctggcgcaagcgcgccctggccctgcccggcgcg
cgcgcgcggctgcacccgcccggcttcgccccggaactgtgcaccctgcgcgcagcgccg
ccggccggcgacggctggctgcacgagatcaagtgggacggttaccgcctgctcgccgac
ctggtcgaaggcgaagtccggctgcgctcgcgcaacgatctggactggaccgcgcgggtg
cccgaggtcacccgcgcggtcgaggcgctgccggtctccgacgcacgcctggacggcgag
ctggtggtgcttgacgcacagggccacagcgatttctccgcgctgcagcgggtgctcgaa
ggcagttcgcggcagccgctgcgctacctgctgttcgacctgccgggcctggccggcgtg
gacctggcgcgcgcgccgctggccgggcgcaaggcgctgctgcagcggctgctaggcaag
cgtgccggcgtgctcgcctacagcgaccacgtcgtcggccacggcgccgaggtgctggcc
gccagcggccgcgccggcttcgagggcatcgtcagcaagcgcgtcgacgcgccatatgcc
ggcggccgtggccaggactggatcaagaccaagcacgagcagggcgacgagttcgtggtg
gtcggctacaccgcgccgaagggcgcgcgcggccacttcggttcgctgctgctgggcagg
cccgaagctggcggcctgcgctacgtcggccgcgtcggcagcggcttcggcgacgaggcg
ctgcgcgagctgtaccgccggatgcggccgctggcgcaggggcaggcgagcgtggcgcta
ccggcgcacgtaccgttcagcgcgcgcagcgtgcactggatcaaacccgaactggtggtc
gaggtcgcgttccgtggctgggccaaggaaggcctgctgcgccaggccagctaccggcgg
ctgcgcgaggacaaggccatggccgagttgaccgcttcctccgatcgcgacgcccgcacc
ggcgtcgccgcttccaagcgcaggacgcgcagtgccgccagcgacgacggcaagcgcggc
gaggcaccgccgcagggcgcagaagtggcgatcagccatccggaacgcgtcgtctacgcc
ggcgacggcatcaccaagggccacgtcgccgcctattaccgcgcggtggcgcgctggatc
ctgcccgagctggcgcggcggccgctgtcgctgctgcgctgtcccgacggcaccggcggc
gaatgcttcttccagaagcacctcggtcgcggcttcggcccgcaggtgcacgcgctgccg
ctgcggcagaagagcggcgtggaggactacctctacctcgatgacgaggccgggctgctg
cagctggtgcagatgaacgcgatcgagttccacccctggggcgcgaccgtggacgatccc
gagcgcgccgaccggctggtgttcgacctggacccgggcgagggcgtgtcgtggaagcag
gtgcgcgacgccgcccgcgaggtccgcgcccggctgcgcgaggccgggctggacagcttc
ctgcgcatgagcggcggcaagggcctgcacgtggtggtgccgctggccccggccgtgccc
tgggaacaggcgcgcgatttctgcgaggccttcgcccgggccatggccgcgcacgcgccg
gagcgctacgtggccagcatgcgcaaggacctgcgtggcggccgcatcttcctggactgg
ctgcgcaacacccgcggcgcgaccagcgtgtgcggctggtcgctgcgcgcacgcgaacac
gccacggtggccatgccgctgcgctgggaggagctggcgaagatcgcctcgcccggcgcc
ttcaccctggacaaggcactgcagcgcgccgcacgactgcgcaaggatccgtgggacggg
atcggcgcgatccggcaggcgctgcccacggcctga

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