Pseudomonas sp. VLB120: PVLB_00020
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Entry
PVLB_00020 CDS
T02897
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psv03032
]
PVLB_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_00020 (gyrB)
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PVLB_00020 (gyrB)
DNA replication proteins [BR:
psv03032
]
Prokaryotic type
DNA Topoisomerases
PVLB_00020 (gyrB)
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PVLB_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AGZ32814
UniProt:
A0AA86A9V9
LinkDB
All DBs
Position
3800..6220
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AA seq
806 aa
AA seq
DB search
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESESTGTHIHFKPSAETFKN
IHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPINSQ
VFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE
QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFA
DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS
ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI
GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVK
KGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLENLVNEFRGVMKTLKRLS
RLYPEELTEHFIYLPEVTLDQLADHAVMQGWLAKFQERLNNSQKSGLVYKASLREDKERN
LWLPEVEITSHGLASYVTFNRDFFGSNDYRSIVVLGGNLSTLLGEGAYVQRGERRKAVSE
FKEALDWLMNESTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAIAADQLFN
TLMGDAVEPRRDFIESNALSVSNLDF
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaatcaaacgtacgactcctccagcatcaaggtgctgaaaggtttggatgcc
gtgcgcaagcgtcccggcatgtacattggcgacaccgatgatggtagcggcctgcaccac
atggtcttcgaggtggtcgacaactcgatcgacgaagccctcgccggtcactgcgatgac
atcaccgtcatcattcacccggatgaatccatcagtgtgcgcgacaacggtcgcggcatt
ccggttgacgtgcataaagaagaaggcgtttcggcagccgaggtcatcatgaccgtgctg
cacgctggcggtaagttcgacgacaactcgtacaaggtgtctggtggtctgcacggtgta
ggcgtttccgtggtgaacgccctttccgagaaactggtcctgaccgtacgccgtagtggc
aagatctgggaacagacgtacgtccacggtgttccacaagcgccgatggcggttgtcggt
gagagtgagtccacgggtacccacattcacttcaagccatctgccgagaccttcaagaat
atccatttcagctgggacatcctggccaagcggattcgtgaactgtccttcctgaactcc
ggggttggcatcctgctcaaggatgaacgcagcggcaaggaagagttcttcaagtacgaa
ggtggcctgcgggctttcgtcgagtacctgaacaccaacaagacaccgatcaactcccag
gtgttccacttcaacgtccagcgcgacgatggcgtgggtgtcgaagtggcgttgcagtgg
aacgacagcttcaacgaaaacctgctgtgcttcaccaacaacattcctcaacgcgatggt
ggtacccacctggtgggcttccgctcttcgttgactcgtagcctcaatagctacatcgag
caggaaggtctggccaagaaaaacaaggtcgccaccaccggtgacgatgcccgcgaaggt
ttgaccgccatcatttcggtcaaggtacctgatccgaagttcagctcccagaccaaggac
aagctggtttcctcggaggtgaaaaccgccgtggaacaggagatgaataagtacttcgcc
gacttcttgctggaaaacccgaacgaggccaaggccgttgtcggcaagatgatcgacgcc
gcccgtgctcgtgaagccgcgcgtaaagcccgtgagatgacccgccgcaagggggcactg
gatatcgccggtctgccgggcaagcttgccgactgccaggaaaaggaccctgctctttcc
gaactttacctggtggagggtgactctgcgggtggctcggccaagcaaggtcgtaaccgc
cgcacccaggcgatcttgccgctcaagggtaagatcctcaacgtcgagaaagcgcgcttc
gacaagatgatctcgtcccaggaagtgggcacgctgatcaccgcgctgggctgcggtatc
ggtcgtgaagagtacaacatcgacaaattgcgttatcacaacatcatcatcatgaccgat
gctgacgttgacggttcgcacatccgtaccctgctgctgacgttcttcttccgtcagttg
ccggagctggtcgagcgcggttacatctatattgcccagccaccgctgtacaaggttaag
aaaggcaagcaggagcagtacatcaaggacgacgaggccatggaagagtacatgacccag
tcggccctcgaagatgccagtctgcacctggatgagtcggcgccagcagtatccggtgta
caactggaaaacctggtgaacgagttccgtggtgtgatgaagacgctcaagcgcctgtcg
cggctgtacccggaagagctcaccgagcacttcatctacctgcctgaagtcacgctggac
cagttggctgatcatgcagtcatgcagggatggctggcgaagttccaggagcgcctgaac
aacagtcagaagtctggtctggtgtacaaggccagcctgcgcgaggacaaagagcgcaac
ctctggctgccggaagttgaaatcacttcccacggcttggccagctatgtcacgttcaac
cgcgacttcttcggcagcaacgactaccgttcgatcgtcgtcttgggtggcaatctgtct
accctgctcggcgaaggtgcctatgtacagcgtggtgaacgccgcaaggcagtcagcgag
ttcaaggaagcgctggactggctgatgaacgaaagcaccaagcgtcataccatccagcga
tacaaaggtctgggtgagatgaaccctgagcagctgtgggagaccaccatggaccccacc
gtgcgccgtatgctcaaggtcaccatcgaagacgcgattgctgctgaccagctgttcaat
accttgatgggcgacgcggttgagccacgtcgtgacttcattgaaagcaatgcgctgtcg
gtgtcgaacctcgacttctga
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