Pseudomonas cremoricolorata: LK03_18305
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Entry
LK03_18305 CDS
T03354
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psw
Pseudomonas cremoricolorata
Pathway
psw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LK03_18305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psw03400
]
LK03_18305 (ligD)
Enzymes [BR:
psw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LK03_18305 (ligD)
DNA repair and recombination proteins [BR:
psw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LK03_18305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AIR91099
UniProt:
A0A089WV65
LinkDB
All DBs
Position
3953249..3955711
Genome browser
AA seq
820 aa
AA seq
DB search
MAKPLNEYQRKRDFSATPEPTGKRGRSGKAQALQFCIQKHDASHLHYDFRLELGGTLKSW
AVPKGPSLDPGQKRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGIWEPQGDALAG
YAKGKLQFRLHGEKLSGLWNLFRTRLAGKKEQWLLVKSDDEHARSEHDYSVVEALPDSVL
SERTLASSHPEPKRTQPAARARRKTDNATLPAILKPQLATLVEAAPSGDWRYEVKFDGYR
LLARIDGKDVRLFTRNGHDWSARLPRQIDALRALKLTSGWLDGEVVVADENGVADFQALQ
NAFDSNQADGLTYYLFDALWLNGDDLREQPLHARRAALQRLLESQPSDTLRYSEDFEGPV
DSLLASACELSLEGLIGKRADSPYRSRRSQDWIKLKCQRRQEFVIVGYTDPKGSREGFGA
LLLALHDDSGALRYAGRVGTGFSSQSLTQIHARLRRLHSSKPALQRPPTGAAARGVHWLR
PRLLAEVSYAQITRAGSVRHAVFHGLRDDKPAKAIDLERPAPSPSKHATLATVQLTHPER
VIDPSTGTTKQQVAEYYAAVAGWLLPHIEQRPVALVRAPEGLDGELFFQKHAAQLHLPDS
HSYSKQQAGQAAMTLDSSAALLTAVQMNTLELHSWNATGKSFERPDRFVLDLDPDPALPW
KAMLQATELTLTLLDTLGLTAFIKTSGGKGLHVIVPLTRRAGWDDVKHFSHAIVSHLAEL
FPERLTDVSGPKNRVGKIFIDYLRNGLGATTVCAYSLRARPGLAASVPVSREELPRLKGA
DQWTIATLLKRLDSVDDPWATMPATRQSITRRMRQQLGLA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgttgaacgagtaccagcgcaagcgtgatttcagtgctacgccggaacct
acgggcaagcgcggtcggtccggcaaggcgcaagccctgcagttctgcattcaaaaacac
gatgccagccacctgcattacgattttcgtctggagctgggcggcacgctcaaaagctgg
gcggtacccaagggcccatcgctcgaccctgggcaaaagcgcctggccgtgcacgtcgaa
gaccacccgctggactatgccagcttcgaagggcatatcccggaaggccattatggtgcc
ggtgacgtgatcgtctgggatcgcggcatctgggaaccccaaggcgatgccctggcgggc
tacgccaaaggcaagctgcagtttcggctgcacggcgaaaagctctcaggcctgtggaat
ctgtttcgcacccgcctggccggcaagaaggagcaatggctactggtcaagtccgatgac
gagcatgcccgcagcgagcacgactacagcgtggtcgaagcacttccagacagcgtgctc
agcgagcgcaccctcgcctccagtcaccccgaacccaaacgcacccaacccgccgctcgc
gctcggcgcaagaccgacaacgccacccttcccgccatcctcaagccacaactggcgacg
ctggtggaagctgcacccagcggcgattggcgttatgaggtcaagttcgacggctaccgc
ctgctggcacgaatcgatggcaaggatgtgcggttgttcacccgtaacggccacgactgg
agcgccaggctgccgcgccagatcgacgccttgcgcgcactcaagctcacgtcggggtgg
ctcgacggtgaagtggtggtggccgatgaaaacggcgtggcggactttcaggccctgcag
aacgccttcgacagcaaccaggccgacggcctcacctactacctgttcgacgccctctgg
ctgaatggcgacgacctgcgtgagcaacccctgcacgctcgccgcgccgccttgcaacgg
ctgcttgagtcgcaacccagcgacaccttgcgctattccgaggacttcgaagggccggtc
gactcgctgctggccagcgcctgcgagctgtccctggaaggcttgatcggcaagcgggcg
gacagcccttaccgcagccgtcgcagtcaggactggatcaagctcaagtgccagcgccgg
caagagttcgtcatcgtcggctacaccgaccccaaaggcagtcgcgaaggtttcggcgcg
ctgctgctggcgctgcacgatgacagcggcgcgctgcgctacgccggccgggtcggcacc
ggtttcagcagccagagcctgacgcagattcatgctcgcctgcgacggctgcacagcagc
aagccggccttgcaacgaccgcctaccggggcagcagcacggggcgttcactggctgcgc
ccgcgattgctggccgaggtgtcgtacgcgcagatcacccgcgccggcagcgtccggcat
gcggtgtttcatggcctgcgcgacgataagccggccaaggccatcgacctcgaacgcccc
gctccgagcccatcgaaacacgccacgctcgccaccgtgcagctgactcaccccgagcgg
gtcatcgaccccagcacgggcactaccaagcaacaggttgccgagtactacgccgccgtg
gcgggttggctattgccgcacatcgagcagcgtccagtggccttggtgcgcgccccagag
ggcctcgacggcgagctgttcttccagaagcacgccgcccagctgcacctgccggatagt
cacagctacagcaagcaacaggcaggccaggcggcgatgactttggacagcagcgccgcg
ctgctgaccgcggtgcaaatgaacaccctggagttgcacagctggaacgccaccggcaag
tcgttcgagcggcccgatcgtttcgtgctcgacctcgatcccgacccggcgctgccgtgg
aaggcaatgctgcaggccaccgaactgaccctcacattgctcgataccctgggccttacg
gcgttcatcaagaccagcggtggtaagggcctgcacgtaatcgtgcccctgactcgccgc
gctggctgggatgacgtgaagcatttcagccacgccatcgtcagtcacctggccgagctg
ttccccgagcgcctgaccgatgtgtcggggccgaagaatcgcgtcggtaaaatcttcatc
gactacctgcgcaatgggctaggtgccaccacggtgtgcgcctactcactgcgcgcacgc
cccggtttggcagcgtcggtaccggtcagccgcgaagaactgccgcgcctcaagggcgcc
gaccaatggaccatcgccaccctgctcaagcgcctggacagcgtggacgatccgtgggcg
acgatgcccgctactcgccaatccatcacccggcgcatgcgccagcagctggggttggcg
taa
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