Pseudoliparis swirei (Mariana hadal snailfish): 130191594
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Entry
130191594 CDS
T09868
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130191594 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
130191594 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130191594 (thoc1)
03041 Spliceosome [BR:
pswi03041
]
130191594 (thoc1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130191594 (thoc1)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130191594 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130191594 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
130191594
NCBI-ProteinID:
XP_056267214
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
VTLFVTHLSIRVDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVF
NKNEQESTFGQKPTEEKEDGMEVEEGEMGEEDAPAPCSIPIDYNLYRKFWTLQDYFRNPV
QCYDKLSWMTFLKFSDETLAVFKSYKLDDMQVSKRKLEELRASGGEHVYFAKFLTSEKLM
DLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQTTWIEETTQLVFQLLKEIP
PDGDKFATMVEHILNTEENWNDWKNEGCSSFVKERTVDDKIKRPTRKRQAPEDFLGKGPD
SKIFMGNDELTRLWNLNHDNMEACKSDSREFMPPLDEFFAEAIEQADPANMVEDQYKAVR
NPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSEMIKTGEED
DDDNGDNLLKDSNDSPGLQSKTVTNQQMDDIAAKLGGQWKALASHLEMKAAELREIETDS
EDLDMQAKLLLVAWQDREGSQATVESLVAALGAAGFPEIADNLSEA
NT seq
1582 nt
NT seq
+upstream
nt +downstream
nt
ggtgacgctgtttgtaacacacctgtcgatccgtgtagatctcctgaggaggctgtccaa
atcccagaatacggtattctgtgggcgaatccagctcttcctggcacgtctcttccctct
gtctgagaaatcagggctcaatctgcagagccaatttaatctggaaaacgtgacggtgtt
caacaagaacgaacaagagagcactttcggccagaagcctacagaggaaaaggaggacgg
catggaggtggaggaaggagaaatgggagaggaggacgctcctgccccatgttccattcc
aattgactacaacttgtacagaaagttctggactctgcaggactacttccgaaaccccgt
gcagtgttacgataaattatcctggatgacattcctgaagttctcagacgagacgctggc
cgtgttcaagagctacaagctggacgacatgcaggtctccaagaggaagctggaggagct
gagggcgtccggaggggagcacgtctactttgccaagtttctaaccagtgaaaagctgat
ggacttgcagctcagcgacagcaacttccggcggcacattctcctgcagtacctcatcct
cttccagtacctgaagggtcaggtcaagttcaagagctccagctgcgttctgaacgacga
ccagacgacgtggatcgaggagacgactcagctggtctttcagctgctgaaggagatccc
tcccgacggggacaagtttgccaccatggtcgaacacatcctcaacacggaggagaactg
gaacgactggaagaacgagggatgctcgagcttcgtgaaggaaaggacggtggatgacaa
gatcaagaggcccaccaggaaaagacaagcgccggaagacttcctcgggaaagggccgga
cagcaagattttcatggggaatgacgagttgactcgactgtggaacctgaaccacgacaa
catggaggcctgcaagtccgacagcagggagttcatgccgccgctggacgagttcttcgc
ggaggccatcgagcaggccgaccccgccaacatggtggaggaccagtacaaagcggtgag
gaacccaaactacggctggcgcgctctgcggctgctgtccaggagaagtccgcacttctt
ccaaccgaccaaccagaagttcaagagcctcgccgactacctcgacagcatggtcagcaa
actggccaaagagctgccgaaggatattccctccgagatgatcaagacgggggaagagga
cgacgacgataacggagacaatcttctcaaagacagcaacgacagtcccggcctccagag
caagacggtgaccaaccagcagatggacgacatcgcggcgaagctgggcggccagtggaa
ggcgctcgcgtctcacttggagatgaaggcggcggagctgcgagagatcgagacggacag
cgaggacctggacatgcaggccaagctgctgctggtcgcctggcaggaccgagagggctc
gcaagccaccgtggagagcctggtcgcggcgctcggcgccgcagggttccccgagatcgc
ggacaacctcagcgaggcctga
DBGET
integrated database retrieval system
