Pseudoliparis swirei (Mariana hadal snailfish): 130196242
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Entry
130196242 CDS
T09868
Symbol
npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130196242 (npc1l1)
Transporters [BR:
pswi02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
130196242 (npc1l1)
BRITE hierarchy
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Motif
Other DBs
NCBI-GeneID:
130196242
NCBI-ProteinID:
XP_056274174
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All DBs
Position
7:6456321..6469610
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AA seq
1363 aa
AA seq
DB search
MFRVAALITFLSFVVLTEAQHEPGYCAFYDECGCNPTVSGSLLPPIVPCYDYSRARALSG
EHYRKLIGVCPILDKGESNTFACCSMKQLLSLELSLAMSKALLMRCPICADNFAHLHCIN
TCSPNQSQTVNVTKVMNVTTGNITREAVISYQAFLSDTFAYGSFQSCKNVRIPATGGFAI
ATMCGRYGAKLCNPQHWYDFQGDSSNGLAPLDIDFQLIKEGDTEGLPEGVIPYSGRALMC
NETTPSGGQACSCQDCQESCPRMPPLPLPPGPFRLLGTDGFLVISIILLCLLLYAFIFYL
FVAYFVRTWKRKEAEKGKGKSKDQNSNDVTQQVIDPSEVTCVDRNSLAAQAFLSSEFRHW
GTLMATYPLTVLLLSAVVVAVFSAGLKSIELTTDPVELWSSPNSRARQEKDFHDTHFDPF
FRTNQLILTAPDRKGHIYDSLLFGLQNFSGLVSKDLIIELLQLQTQIQNIEFWSEDLNRT
ASLKDVCFAPLNPSNPSLTDCAVNSLPQYFQNSLKNIDAKVNMTELGVTKEVDWRDHVIY
CLNSPLSFQDITDLRMSCMADYGAPVFSFLAVGGYENDDFTNAEAFILTFSLNNYARDKP
KFKVAMQWETEFLKIVQAYQKNPAAKFTFAYMAERSLEDEINRTTAEDIPIFMISYAVIF
VYISVALGEYTSWKRILVDSKFLVGLGGIMVVGCSVLASMGFYSWIGIPSSLIILQVVPF
LVLAVGADNIFIFVLEYQRDMRKHGETREEQIGRVLGNVAPSMLLCSLSETICFFLGALS
TMPAVKTFALYAALAVLMDFLLQMTAFVALLSLDTRRQDNNRCELLCCVTVSTQHPNKPN
EGILLPLMRRYYAPVLLHRYTRIIVMVVFIFMFCGSVFLMFNVTVGLDQELAMPQGSYML
DYFQYLYKYFEVGVPVYFVTKKGFNFTTVEGMNGVCSSVGCDQFSLTQKIQYATNHPELS
YLAIPANSWVDDFIDWLNPGSRCCRLYSFGPNAGNFCPASESAPFLCTTKCVDAPPDGVL
RPTVEDFNRFLPNFLGNRPGLKCPKGGLGAYNKAVVTDQSGEIIATRFMAYHTPLSNSQE
FTAALLKARELAHNITMGMRQIPGTSPDFEVFPYTVTNVFYEQYLTIVPEGLFIISLCLM
PTFVVCCLLLGLDLRSGLLNLFTIIMITVDTVGVMTLWGIDYNAVALINLVTAVGISVEF
VSHITRSFALCTKTTHVERAMEATANMGSAVIAGVAMTNLPGILVLAFAKAQLIQIFFFR
LNLVITLLGMAHGLVFLPVLLSYFGPGVNKALLLQLQQEKAKANRELELRHNMRQIYDNL
GYESNELKLDSDSNSTKAPTDTCIPAQMMENQQEEGEERIDRF
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgttccgtgtcgctgctctgatcaccttcctgtctttcgtggtgctgacagaggcccag
catgagccgggctactgtgctttctatgatgagtgtggttgcaacccgacggtctcagga
tcgctcctccctcctatcgtcccatgttacgactacagccgtgcccgagccctctcaggg
gaacactacaggaaactcataggggtgtgtcccatcctggacaaaggagagagcaacact
ttcgcctgctgctccatgaaacagcttttgtccctggaattgagtctggccatgtccaag
gccttgctgatgcgctgccccatctgtgcggacaactttgcccacctgcactgcatcaac
acctgcagccccaaccagagccagacagtaaacgtcacaaaggtgatgaacgtcaccacc
ggaaacataacgagggaggccgtgatctcttaccaggcgttcttaagcgacaccttcgca
tatggctccttccagtcgtgcaaaaatgtccggatccccgccacaggaggctttgccatt
gccaccatgtgtggtcggtatggcgccaagttgtgcaacccccagcactggtatgacttc
cagggagactccagtaacggcctggctccactggacatcgactttcaactgataaaagag
ggagataccgagggacttcccgagggcgtgattccctacagtggacgtgctctgatgtgt
aacgagaccacgccatccggaggtcaggcctgctcctgccaggactgccaagagtcgtgc
ccgaggatgccgccccttccactgccgcccggccccttcagactgttggggactgacgga
ttcctcgtgatttcgatcatcttactctgtctcctgctgtacgccttcattttctacctc
tttgtggcttactttgtgaggacttggaaaagaaaggaggcagagaaaggaaaaggaaaa
agcaaagaccagaacagtaatgatgtgactcagcaggtcattgatccgtcagaggtgacc
tgtgtggacaggaacagcctggctgctcaggctttcctaagctcagagtttcgccattgg
ggaaccctgatggccacttatcctctcacggtgctcctgctgtcggctgtcgtcgtggcc
gttttctctgccggcctcaagtccatcgagctcaccactgacccggtcgagctgtggtcc
tctccaaacagccgcgcccgccaggagaaagacttccacgacacacactttgaccctttc
ttcaggactaaccagctgatcttgacggcgccggacaggaaaggccacatttacgactct
ttgctctttgggctgcagaacttcagtgggcttgtctccaaagatctgatcattgagctc
ctgcagctccagacacaaatccagaacattgagttctggtcagaggatctgaaccgcaca
gcgagtctgaaggacgtgtgtttcgcgccactgaacccatccaaccccagcctgacggac
tgcgcagtcaacagcctgccgcagtacttccagaacagtctgaaaaacattgacgcgaag
gtgaacatgacagagctgggagtgaccaaggaggtggactggagggaccacgtcatctac
tgcctcaactctcccctgtccttccaagacatcacggatttacgtatgagctgcatggct
gattacggagctccggtcttctcctttctggctgtgggaggctatgagaatgacgacttc
accaacgcggaggctttcatcttgaccttctccctcaacaactacgctcgcgacaagccc
aagttcaaagtggcgatgcagtgggagacagagtttctgaaaattgtccaggcctaccag
aagaacccagcagccaaattcacctttgcatacatggcagagaggtctctggaggatgag
attaatcggacaacagccgaagacatccccatcttcatgattagctatgctgtaatcttt
gtttacatttccgtggcactgggagagtacacttcatggaaacgcatactggtggactcc
aagtttctggtgggtctgggtgggataatggtagtcggctgttctgtcctggcctctatg
ggcttttactcctggatcggcatcccctcctcgctgatcattctgcaggtcgtgcctttc
ctggtgctcgctgtcggcgccgacaacatcttcatctttgttctggagtaccagagagat
atgcggaagcacggcgagacgagagaggagcagattggtcgcgtccttggaaacgtggct
cccagcatgctcctgtgcagtctctccgagaccatctgcttctttctaggggccttgtcc
accatgccagcagtgaagaccttcgctctgtacgctgctctggccgtgctcatggacttc
ctgctccagatgaccgcctttgtggcgctgctgtccctggacacccggcgccaagacaac
aaccgctgtgaactgctctgctgcgtcacagtgtccacccagcaccccaacaagcccaac
gagggcattcttctgcccctcatgaggagatactacgcccctgttctactgcaccgttac
accaggatcatagtgatggtggttttcatcttcatgttctgtggatccgtatttctcatg
tttaatgtgaccgtgggtttggatcaggagctggctatgcctcagggctcttatatgctg
gactatttccagtacctgtacaaatactttgaagttggagtccctgtttactttgtaaca
aagaaaggcttcaacttcaccaccgtggagggcatgaatggagtctgctccagcgtgggc
tgcgatcagttctctctcacccagaagatccagtacgccaccaaccaccctgaattatcc
tacttggctattcctgctaactcctgggtggatgatttcattgattggctgaaccctgga
tccagatgttgtcgtctgtacagcttcggaccaaatgcgggaaatttctgtcctgcaagc
gaatccgctcctttcctctgtaccacaaagtgtgtagatgctcctccagatggtgtcctc
aggcccacggtggaagatttcaaccgcttcctccccaacttcctgggtaacaggcctggc
ctgaagtgccccaaaggtggccttggagcctataacaaagcggtggtgacggatcagagt
ggagaaattatagccactcggttcatggcttaccacacacctttaagcaactctcaggag
ttcaccgctgcactgctgaaggccagagagctggcccacaacatcacaatgggcatgagg
caaataccaggcacctcccctgactttgaagtatttccttacacggtgaccaatgtgttt
tatgagcagtacctgactattgtgccggagggactcttcatcatctccttgtgtctaatg
ccgaccttcgtcgtgtgctgtctgctgctgggtttggatctgcgctctggtctgctcaac
ctgttcaccataatcatgatcaccgtggacaccgttggtgtcatgacactgtggggcata
gattacaacgcagtggcccttatcaatctggtcacggcggtgggaatctccgtggagttt
gtgtctcatataacgagatcttttgcactctgcaccaagaccacacatgtagaacgagct
atggaggctacagccaacatgggcagtgcggtgattgctggtgttgccatgaccaacctg
ccaggcatccttgtgctggctttcgccaaagcacaactcattcagatcttcttcttccga
ttaaacctggtcattacacttttggggatggctcatggactcgtattcctccctgtactg
ctcagctactttggtcctggtgtgaataaagcgctgttgctgcagctccagcaggagaaa
gcgaaggccaaccgggagctggagctgagacacaatatgagacaaatatatgataactta
ggctatgaaagcaatgagctaaaactggactcggactcaaactccacaaaggcccccaca
gatacctgcatacctgcccaaatgatggagaaccaacaggaggagggagaggagagaatc
gaccgtttctga
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