Pseudoliparis swirei (Mariana hadal snailfish): 130197743
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Entry
130197743 CDS
T09868
Name
(RefSeq) tripartite motif-containing protein 16-like protein
KO
K12006
tripartite motif-containing protein 16
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130197743
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130197743
BRITE hierarchy
Motif
Pfam:
zf-C3HC4_4
PRY
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
Gp58
zf-RING_5
zf-RING_2
U-box
Prok-RING_4
zf-RING_6
DUF445
zf-ANAPC11
DDE_Tnp_IS240
Sec10_N
Motif
Other DBs
NCBI-GeneID:
130197743
NCBI-ProteinID:
XP_056276585
LinkDB
All DBs
Position
8:4572986..4574647
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AA seq
475 aa
AA seq
DB search
MGPKRMKLDKEICSCSMCLDLLKVPVTIPCGHSYCMSCIKAHWDEEDQKKLYSCPQCRQT
VTPRPVLVKSTMLADLVEEMKKTGLQAAPADHCYAGAEDVDEHKGHDTVLAAEERSERQK
ELEGSRLNIQQRILNREKDLKLLQQEVEAYNLSANKTVEDSEKSYANLIRFMKKRRSELK
QQVRSQQRTEASRVKELQEKLEQEITELKRNDAELKKISQTDDLNQFLHSISSLSPLSGS
TDSSSDSTDSSSINICPLRYFEDVTTAVSEDSDELVWTDVSLTVSEVAEPKTRVGFLKYS
REITLDPNTAHTWLSLSDGNKKATLKKEQQTFSSHTDAFKECLQVLTRESLTGRSYWEVE
WRGEGVIVALAYKDIPRKGEGEECVFGVNNQSWALTCLKESYIFFHNKVHTPVSGPVSTR
IGVYLDHRAGILSFYSVNATMTLLHRVETTFTQPLHAGFSLYYSFGYSAEFCKLK
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaaaaagaatgaagctggacaaggaaatctgctcttgttcgatgtgtttggat
ctcctgaaggttccggtgactattccctgtggacacagctactgcatgagctgtattaaa
gcccactgggatgaagaggatcagaagaaactctacagttgccctcagtgtaggcagacc
gtcacaccgaggcctgtcctggtgaagagcaccatgttggcagatttagtggaggagatg
aagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtg
gatgaacacaaaggccacgacacagtcttagctgcagaagaaaggagcgagaggcagaag
gagctggaggggagtcgactaaacatccagcagagaatcctgaacagagagaaagacctg
aagctgctccaacaggaggtggaggcctacaatctctctgctaacaaaacagtggaggac
agtgagaagagctacgctaatctgatccgtttcatgaagaaaagaagatctgaattgaag
cagcaggtcagatcccagcagagaactgaagcgagtcgagttaaagagcttcaggagaag
ctggagcaggagatcactgagctgaagaggaacgacgctgagctgaagaagatttcacag
acagatgatctcaaccagtttctccacagcatctcctcactgtcacccctcagtggctct
acagactcatccagtgactctacagactcatccagcatcaacatctgtcctctgagatac
tttgaggacgtgacaacggctgtttcagaagacagtgatgaactggtgtggacagacgtc
tcattgacggtgagtgaagtagcagagcccaagaccagagttggattcttaaaatattca
cgtgaaatcactctggatccaaacacagcacacacgtggctgtcactatcggatgggaac
aaaaaagcaacgttgaagaaagaacaacagactttttcgagtcacacagatgcattcaaa
gaatgcttacaggtcctgactagagagagtctgacaggacgtagttactgggaggtggag
tggagaggagaaggagttattgtagcactcgcatacaaggatatccccagaaagggggaa
ggggaagaatgtgtatttggagtaaataaccaatcttgggctttgacatgtctcaaagaa
agttatatctttttccacaacaaagtccacactcctgtctcaggtcctgtgtccaccaga
attggagtgtacctggaccacagagcaggtattctgtccttctacagcgtcaatgcaacc
atgactctcctccacagagtcgagaccacattcactcagcctctccacgctggatttagt
ctttattattcctttggatacagtgctgagttttgtaaactaaagtag
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