Pseudoliparis swirei (Mariana hadal snailfish): 130198215
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Entry
130198215 CDS
T09868
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130198215
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130198215
BRITE hierarchy
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
Atg2_N
zf-ANAPC11
zf-RING_10
zf-RING_11
CENP-F_N
DUF4455
Gp58
Prok-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130198215
NCBI-ProteinID:
XP_056277336
LinkDB
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Position
8:complement(869611..874353)
Genome browser
AA seq
558 aa
AA seq
DB search
MEQKGVQLDRETFSCSICLDLLKDPVTIPCGHSYCMNCIKAHWEEEEGKKLLSCPQCRQT
FTLRPVLLKSTMLAALVEQLKKTGLQAAPADHCYAGAEDVACDVCTGRRLKAFKSCLQCV
VSLCEKHLQPHYDAPAYEKHKLVEPSNQLQENICSRHKEEMKIFCRTDQQCICYLCLMDE
HKGHDTVSAAAERTERQRELEGSRLNIQQRIQDREKDLKLLHQEVEALNLSADKTVEDSE
KIFTELIRLMENRSSDVKQQVRSRQRTEVSRVQELQEKLEQEITELKRNEAELKLLSHTE
DLKQFLHYPSLSPRAESTHSSGIDIRPLRHFEDVTAAVSEVRDKLQDVLGDKWTNVSLAV
TEVDDLLSPSQAEPETRAGFLRYSCDITLDPNTAYTRLLLSDGNRKATCMREEQSYSSHS
DRFTTCEQVLSRESLTGRCYWEVEWRGRVYVAVSYKNISRTGSGDECGFGYNNKSWALYC
LNNSFIFLHNNVQTPVSGPQSSRLGVYLDHRAGILSFYSVSDTMTLLHRVQTTFTQPLYA
GLGLYYSPGATVEFSKLK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaaaggagttcagctggatcgggaaaccttctcttgttccatctgtctggat
ctcctgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaa
gcccattgggaggaagaggaggggaagaaactcctcagctgccctcagtgtaggcagacc
ttcacactgaggcctgtcctgctgaagagcaccatgttggcagctctagtggagcagctg
aagaagactggactccaagctgctcctgctgaccactgctatgctggagctgaagatgtg
gcctgtgatgtctgcactgggaggagactgaaggccttcaagtcctgtctgcaatgtgtg
gtctccttatgtgagaaacacctccagcctcattatgatgcacctgcatatgagaaacac
aagctggtggagccctccaaccagctccaggagaacatctgctctcgtcataaagaggag
atgaagatcttctgccgtactgatcagcagtgtatctgctacctctgcttaatggatgaa
cataaaggccacgacacagtctcagctgcagcagaaaggaccgagaggcagagagagctg
gaggggagtcgactcaacatccagcagagaatccaggaccgagagaaagacctgaagctg
ctccatcaggaggtggaggccctcaacctctctgctgataaaacagtggaggacagtgag
aagatcttcactgagctgatccggctcatggagaacagaagctctgacgtgaagcagcag
gtcagatcccggcagagaactgaagtgagtcgagtccaagagcttcaggagaagctggag
caggagatcactgagctgaagaggaacgaggctgagctgaagctgctgtcacacacagag
gatctcaagcagtttctccactacccctcactgtcaccacgcgctgagtctacacactcg
tccggcatcgatatccgtcctctgagacactttgaggacgtgacggcggctgtgtcagaa
gtcagagataaactacaggacgttctgggggacaagtggacaaacgtctcactggcagtg
actgaagtggacgatttactgtctccttcacaagcagagcccgagaccagagctggattc
ttaaggtattcatgtgacatcactctggatccaaacacagcatacacacgtctgttatta
tctgatgggaacagaaaagcaacatgtatgagagaagaacagtcttattctagtcactca
gacaggttcactacatgtgagcaggtcctgagtagagagagtctgactggacgttgttac
tgggaggtggagtggagaggaagagtttatgtagccgtctcatacaagaatatcagcaga
acagggagcggggatgaatgtgggtttggatacaataataaatcttgggcgttatattgt
ctcaataacagttttatatttcttcacaacaatgtccaaactcccgtctctggtcctcag
tcctccagattaggagtgtacctggatcacagagcaggtattctgtccttctacagcgtc
tctgacaccatgactctcctccacagagtccagaccacattcactcagcctctctatgct
ggacttgggttgtattattctcctggagccactgttgagttcagtaaactcaaatag
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