Pseudoliparis swirei (Mariana hadal snailfish): 130198219
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Entry
130198219 CDS
T09868
Name
(RefSeq) tripartite motif-containing protein 16-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130198219
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130198219
BRITE hierarchy
Motif
Pfam:
zf-C3HC4_4
PRY
SPRY
zf-C3HC4
zf-B_box
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
U-box
zf-RING_2
zf-RING_5
Prok-RING_4
zf-ANAPC11
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
130198219
NCBI-ProteinID:
XP_056277337
LinkDB
All DBs
Position
8:2217652..2219325
Genome browser
AA seq
541 aa
AA seq
DB search
MAQKGVQLDQETFSCSICLDLLKDPVTIPCGHSYCMNCIKAHLDKEDGKKLHSCPLCRKT
FTPRPVLLKNTMLAALVEQLKKTGLQAAPADHCYAGAEDVACDVCTGRRLKAFKSCLVCL
ASYCEKHLQPHYDSAPLKKHKLVEPSNKLQENICSRHNEVMKIFCRTDQQCICYLCLMNE
HKGHDTVSAAAERTERQNELEGSRLNIQQRIQDREKYLKLLHQEVEALNLSANKTVEDSE
KIFTELIRLMVNRSSDVKQQVRSRQRTEVSRVQELQEKLEQEITELKRNEAELKLLSHTE
DLKQFLLHYPSLSPRAESTHSSGIDIRPLRHFEDVTAAVSEVRDKLQDVLREKWTNPKTR
AGFLKYSCELSLDPDTATTWLLLSDEDRKATLMREEQSYASHSDRFSGCDQVLSRESLMG
RCYWEVKWRGEGVDVAVAYKNISRKGNGDECVFGYNNKSWALRCNKNGCNFRYNNVQTPV
SGPQSSRLGVYLDHRAGILSFYSVSDTMTLLHRVQTTFTQPLYAGLHPFSYGDTAELCNL
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaaaggagttcagctggaccaggagaccttctcttgttccatctgtctggat
ctcctgaaggatccggtgactattccctgtggacacagctactgcatgaactgtattaaa
gcccacttggataaagaggatgggaagaaactccacagctgccctctgtgtaggaagacc
ttcacaccgaggcctgtcctgctgaagaacaccatgttggcagctctagtggagcagctg
aagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtg
gcctgtgatgtctgcactgggaggagactgaaggccttcaagtcctgtctggtgtgtctg
gcttcttactgtgagaaacatcttcagcctcattatgactctgctccattaaagaaacac
aagctggtggagccctccaacaagctccaggagaacatctgctctcgtcataatgaggtg
atgaagatcttctgccgtactgatcagcagtgtatctgttacctctgcttaatgaatgaa
cataaaggccacgacacagtctcagctgcagcagaaaggaccgagaggcagaatgagctg
gaggggagtcgactcaacatccagcagagaatccaggaccgagagaaatacctgaagttg
ctccatcaggaggtggaggccctcaacctctctgctaataagacagtggaggacagtgag
aagatcttcactgagctgatccggctcatggtgaacagaagctctgatgtgaagcagcag
gtcagatcccggcagagaactgaagtgagtcgagtccaagagcttcaggagaagctggag
caggagatcactgagctgaagaggaacgaggctgagctgaagctgctgtcacacacagag
gatctcaagcagtttctactccactacccctcactgtcaccacgcgctgagtctacacac
tcgtccggcatcgatatccgtcctctgagacactttgaggacgtgacggcggctgtgtca
gaagtcagagataaattacaggacgttctgagagagaaatggacaaaccccaagaccaga
gctggattcttaaagtattcatgtgagctctctctggatccagacacagcaaccacatgg
ctgttattatctgatgaggacagaaaagcaactttaatgagagaagaacagtcttatgct
tctcactcagacagattcagtggatgtgatcaagtcctgagtagagagagtctgatggga
cgttgttactgggaggtgaagtggagaggagaaggagttgatgtagccgttgcatacaag
aatatcagcagaaagggcaacggagatgaatgtgtctttggatataataacaaatcttgg
gcattaagatgtaacaaaaacggttgtaactttcgatacaacaatgtccaaactcctgtc
tctggtcctcaatcctccagattaggagtgtacctggatcacagagcaggaattctgtcc
ttctacagcgtctctgacaccatgactctcctccacagagtccagaccacattcactcag
cctctctatgctggacttcatcctttcagttatggagacactgctgagttgtgtaatctg
aaatag
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integrated database retrieval system