Pseudoliparis swirei (Mariana hadal snailfish): 130198264
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Entry
130198264 CDS
T09868
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130198264
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130198264
BRITE hierarchy
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-ANAPC11
DUF4455
Prok-RING_4
zf-RING_11
Gp58
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130198264
NCBI-ProteinID:
XP_056277374
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Position
8:648998..651317
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AA seq
595 aa
AA seq
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HAPFTEPSHVVHIRSQSRVASEEVKLRQSLLLRGEKEQKGVQLDRETISCSICLDLLKDP
VAIPCGHSYCMNCIKAHWEEEEGKKLLSCPQCRQTFTLRPVLLKNTMLAALVEQLKKTGL
QAAPADHCYAGAEDVACDVCTGRRLKAFKSCLQCVVSLCEKHLQPHYDVPAYEKHKLVEP
SNKLQENICSRHDEVMKIFCRTDQQCICYLCLMDEHKGHDTVSAAAERTERQRELEGSRL
NIQQRIQDREKDLKLLHQEVEALNLSADKTVEDSEKIFTELIRLMENRSSDVKQQVRSRQ
RTEVSRVQELQEKLEQEITELKRNEAELKLLSHTEDLKQFLLHYPSLSPRAESTHSSGID
IRPLRHFEDVTAAVSEVRDKLQDVLGDKWTNVSLAVTEVDDLLSPSQAEPETRAGFLRYS
CDITLDPNTAYTRLLLSEGNRKATFMSEEQSYSSHSDRFTAWCQVLSRESLTGRCYWEVE
WRGGVNVAVSYKNISRTGRGNACLFGYNNKSWALLCVNNSFTFYHNKVQTPVSDPQSSRL
GVYLDHRAGILSFYSVSDTMTLLHRVQTTFTQPLYAALGFDYYSSGATAEFSKLK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
cacgccccgttcactgaaccgtcacatgttgttcacatcagaagtcaaagcagagtcgct
tctgaggaagtgaaactcagacagtcgttgctcctgagaggtgaaaaggagcagaaagga
gttcagctggatcgggaaaccatctcttgttccatctgtctggatctcctgaaggatccg
gtggctattccctgtggacacagctactgcatgaactgtattaaagcccactgggaggaa
gaggaggggaagaaactcctcagctgccctcagtgtaggcagaccttcacactgaggcct
gtcctgctgaagaacaccatgttggcagctctagtggagcagctgaagaagactggactc
caagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgc
actgggaggagactgaaggccttcaagtcctgtctgcaatgtgtggtctccttatgtgag
aaacacctccagccacattatgatgttcctgcctatgagaaacacaagctggtggagccc
tccaacaagctccaggagaacatctgctctcgtcatgacgaggtgatgaagatcttctgc
cgtactgatcagcagtgtatctgttacctctgcttaatggatgaacataaaggccacgac
acagtctcagctgcagcagaaaggaccgagaggcagagagagctggaggggagtcgactc
aacatccagcagagaatccaggaccgagagaaagacctgaagctgctccatcaggaggtg
gaggccctcaacctctctgctgataaaacagtggaggacagtgagaagatcttcactgag
ctgatccggctcatggagaacagaagctctgacgtgaagcagcaggtcagatcccggcag
agaactgaagtgagtcgagtccaagagcttcaggagaagctggagcaggagatcactgag
ctgaagaggaacgaggctgagctgaagctgctgtcacacacagaggatctcaagcagttt
ctactccactacccctcactgtcaccacgcgctgagtcgacacactcgtccggcatcgat
atccgtcctctgagacactttgaggacgtgacggcggctgtgtcagaagtcagagataaa
ctacaggacgttctgggggacaagtggacaaacgtctcactggcagtgactgaagtggac
gatttactgtctccttcacaagcagagcccgagaccagagctggattcttaaggtattca
tgtgacatcactctggatccaaacacagcatacacacgtctgttattatctgaggggaac
agaaaagcaacatttatgagtgaagaacagtcttattctagtcactcagacaggttcact
gcatggtgtcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggag
tggagaggaggagttaatgtagccgtctcatacaagaatatcagcagaacagggagaggg
aatgcatgtctgtttggatacaataataaatcttgggcgttactttgtgtcaataacagt
tttacattttatcacaacaaagtccaaactcccgtctctgatcctcaatcctccagatta
ggagtgtacctggatcacagagcaggtattctgtccttctacagcgtctctgacaccatg
actctcctccacagagtccagaccacattcactcagcctctctatgctgcacttgggttt
gattattattcttctggagccactgctgagttcagtaaactcaaatag
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