Pseudoliparis swirei (Mariana hadal snailfish): 130198996
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Entry
130198996 CDS
T09868
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130198996 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130198996 (mbd4)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130198996 (mbd4)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
130198996 (mbd4)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130198996 (mbd4)
BRITE hierarchy
Motif
Pfam:
MBD
HhH-GPD
DUF5036
Motif
Other DBs
NCBI-GeneID:
130198996
NCBI-ProteinID:
XP_056278121
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All DBs
Position
9:complement(25338565..25341391)
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AA seq
480 aa
AA seq
DB search
MAADVGGREEKNKSQLVDNDLNSTPLKMHTDCDARLETSDKRNNQSPKCEDDSRRTSTLP
HGWIREVRQRKAGKTAGKMDIYITSPQGQRFRSRASLHAFLLKDGEGILDINLFDFTASK
DDVVSKGRRRTRKKRHAGGRKETTDSPPSKSKRASPCLGSAAADGEAESRTRAASSTAEE
DDVGPRESPSSRQRNTPAAHKVDSRPPVPTLNVEPATESEDEEEGGGGERKDEGDCECSF
DLEADSRRDEEAAFPDTAGGSCTPVGDSQNKSKSVEDKRKTSPYFSRKLCRDGPSPPRRK
AFRKWTPPRSPYNLVQETLFHDPWKLLVATIFLNKTSGKMAIPVLWRFFERYPSPEVTRE
ADWKPLSDLMKPLGLYELRAKTLVRFSDEYLAKEWRFPIELHGIGKYGNDSYRIFCAGEW
REVSFRYFLIFFAVHECRRSRPYFNRLHFTFTKKKKVKPEDHMLNKYHDWLWENHEELGI
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagatgtgggaggaagggaagaaaaaaataaaagtcagcttgtggataatgat
ttgaacagcacacctctcaaaatgcacactgactgcgatgcccggctggagaccagcgac
aaaagaaacaaccaaagtcccaaatgtgaagacgactcccgccgtacttcaacgctgccc
catggctggatcagagaggtgaggcagcggaaagctggcaagacagcgggcaaaatggac
atctacattacaagtccccaggggcagaggttccgctcgagagcatccctgcatgctttc
ctcctgaaagacggagaagggatcttagacataaacctctttgacttcaccgcatccaag
gacgacgtcgtctccaaagggcgacgcaggacgagaaagaaaagacacgcaggcggacgg
aaagagacgacggattcccctccgagtaaatccaagagagcctctccctgcctcgggagt
gccgccgcagacggagaggcggagagtcgcacgcgagctgcatcttcgaccgcagaggag
gacgacgtcggaccgcgggagtctccctccagtcgacaacgaaacactcccgcggcgcac
aaggtcgactcgaggcctcctgtgccaacgctgaacgtggagcctgccaccgagagcgag
gatgaggaggagggaggcggaggggagaggaaagacgaaggcgactgcgagtgtagtttt
gatctggaggccgacagccgtcgggatgaggaggcggcgttcccagacaccgccggtggg
agctgcacaccagtcggcgattcccagaataagtccaagagtgtggaagacaaacggaaa
acaagcccttatttcagcaggaaactctgcagagatggcccgagcccacccaggaggaag
gccttcaggaagtggacgccccctcgctcgccctacaacctcgtccaggaaacccttttc
cacgacccctggaagctgctggtggccaccatcttcctgaacaagaccagcggcaagatg
gccataccggtgctgtggcggttcttcgagcgttacccgtccccagaggtgacccgcgag
gccgactggaagcccctgtccgacctcatgaagcccctcggcctgtacgagctgcgagcc
aaaacactcgtacgcttctcagatgaatacctcgccaaagagtggcgtttccccatcgag
ctgcacgggatcgggaagtacggcaacgactcctacaggatcttctgcgcgggcgagtgg
agagaggtgagtttccgttattttttaattttttttgccgtccacgaatgcagacgttcg
cggccatattttaaccgccttcattttacgtttacaaaaaaaaaaaaggtgaagcccgaa
gatcacatgttgaacaaataccacgactggctgtgggagaaccacgaagagctcgggatc
tga
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