Pseudoliparis swirei (Mariana hadal snailfish): 130199327
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Entry
130199327 CDS
T09868
Symbol
smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130199327 (smc5)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
130199327 (smc5)
BRITE hierarchy
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_13
FtsK_SpoIIIE
GCN5L1
AAA_29
AAA_25
Motif
Other DBs
NCBI-GeneID:
130199327
NCBI-ProteinID:
XP_056278699
LinkDB
All DBs
Position
9:complement(12714284..12727458)
Genome browser
AA seq
1077 aa
AA seq
DB search
MNSSTKKRRQSHVNTGSQTTNSKANMFSGDQKHELGVEGSFVEGSILRITMKNFLTYDYS
VVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAILGRGDKIGLYIKRGCNKGFIEIEL
FKTGGNVVINREIHVENNQSLWTLNGRHSNQKSVEEEVKALHIQVSNLCQFLPQEKVGEF
AKMSKIELLEATEKSVGPPNMYEYHCGLKNFRNRERELENVVKEKASFLEKAKQRNERNK
HDVNRYYEKKRHLDMILLLEKKKPWVEYETTRKECEGAKKERDDAKKQLAALKQAQAPML
GKIQLIDEQLKPTEAQIKAKTVAIKEASLKCKQKQEQLDRKHKEIADIKQAQRLKQMEEE
DHQKRISNTRRTIDDLKAELAKVGDQPDVIPRINAVNVELRNIREERAKIEGEKADLRRE
KDNLYAESTMLERKLSDMNNMMNAKEEKLQRRHRDTHTALQWLRHNRQLFAGNVHEPMML
VINVKDHRFAKFVENHISFHDLRAFVFQRKDDMEKFMIEVRDKMNLKVNSISAPENMCSR
RQPSRNIESLRRFGFFTYLREMFDAPDEVMSYLCHQYKVHDVPVGNDQTKAMIKTVIEEP
YLRVFYTTDERYTLKRSHYSNKISTSNSAVHPSQYLTITVDAEEKRLLEQQMKTCEVKLR
DIDERIKVLQAEAATLDRRDNELLAEKKHLSEVKGKKRQLEQKISTKQDSLGQMEHSVID
LQKIEEETKEKIAVVNSHKVSIVTVFMAKLKLRSKLTMEKVYLALETVGLMAEKAKLEID
CRDGVSELKNTVQKCSRLEQRKVQLTEQCKGLLKRAMAICKMKPDESLPKDLHNAFSKLP
DTLDEIDAMLNEERSRAECFTSLSENVVDEYNKREQEIKHLEKELEDESNALNAFRQNIS
EAKERWLNPLKQLVEQINDKFSDFFRSMQCAGEVDLHSENEEEYEKYGIRIRVKFHSSTQ
LHELTAYHQSGGERSVSTMLYLMALQKLNRCPFRVVDEINQGMDPVNERRVFDIVVRTAC
KETTSQYFFITPKLLQNLQYADEMTVLCVHNGSHMLSSDQWDEKAFVRRRLKIKARE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgtccaccaaaaaacggcgtcaaagtcacgtcaacaccggctcacaaacgacc
aacagcaaagcgaacatgttctcaggcgaccagaagcacgaactcggagtcgagggtagt
tttgtggagggatccatacttcgcatcaccatgaaaaacttcctgacctacgactactct
gtggtgtatccgggacccaatctgaacatgattgttggagccaatggaactggcaagtcg
agcattgtgtgtgccatctgtctgggtctggctggcaagacggctatcctgggcagaggt
gacaagattgggctctatatcaaacgtgggtgcaataaaggatttattgagattgaactg
ttcaagactggtggtaatgtagtgattaacagagagatccacgtggagaacaatcagtca
ctgtggacgctgaatggaagacacagcaaccagaaatcagtggaagaagaagtcaaggct
ctgcatatccaagtcagcaacctctgccagtttctgccgcaggaaaaagtgggagagttt
gccaagatgtccaaaattgagttgctggaggcaactgagaaatcagttgggcccccaaat
atgtacgagtaccattgtgggctcaaaaactttcgcaacagagaacgagaactggagaac
gttgtgaaggagaaagccagtttcctggaaaaagccaagcagaggaacgagaggaacaaa
cacgacgtgaaccgttactacgaaaagaagagacatctggacatgattttgttgcttgag
aagaagaagccgtgggtggagtatgagaccacccgtaaggagtgtgagggcgcgaagaag
gagcgagacgatgccaaaaagcagctcgctgccctgaagcaggcccaggcgccgatgctg
gggaagatccagctgattgatgaacagttgaagcccacagaggcacaaataaaggctaag
actgtcgcgatcaaagaagcttctctgaagtgcaaacagaaacaagaacagttggatcga
aaacacaaagagatagcagatattaaacaggcacaaaggctgaagcagatggaagaggaa
gaccaccagaagcgaatcagcaacaccagacggaccattgatgacttgaaggcagagctc
gccaaagttggcgaccaacctgatgtgatcccacgaatcaacgctgtgaatgtcgagctg
aggaacatccgggaggagagagccaagatcgaaggagagaaggccgacctccgcagggag
aaagacaacctctatgctgagtccacaatgttggagagaaagctcagtgacatgaacaac
atgatgaacgccaaagaggagaagctgcaaagacgccacagggacacacacactgccctc
cagtggctccggcacaacagacaactctttgctggaaatgtccacgagcccatgatgctg
gtgatcaatgtgaaagaccatcgctttgctaagttcgtggagaaccacatctcattccac
gatctgagggcgttcgtcttccagagaaaagatgacatggaaaaattcatgatagaggtc
cgtgacaagatgaacttgaaagtgaactccatctctgctccggagaatatgtgctctcgg
cgccagccgtcgcgaaatattgagtccctgaggcgttttgggttcttcacctacctacgc
gagatgttcgacgcccctgacgaggtgatgagttacctctgtcaccagtacaaagtgcat
gacgttcctgtgggcaatgaccaaacgaaagccatgatcaaaacggtgattgaggagccc
tacctcagggtgttctacaccacagatgagaggtacacattgaagaggtcccactactcc
aacaagatcagcaccagtaactccgcagtgcacccttcccagtacctcaccatcactgtg
gatgctgaagagaagcggctgctggagcagcagatgaagacctgtgaggtgaagttacga
gacatcgacgagcggataaaggtcctgcaggcggaagccgccacactggatcgccgtgac
aacgagttgttggcagagaagaagcacctttctgaagtaaagggcaaaaagaggcaactg
gagcagaagatcagtactaagcaggacagtctggggcagatggagcacagcgttattgac
ctgcagaagattgaagaggaaactaaagaaaaaattgccgttgtcaattcccacaaagtg
tccatagtcacagtgttcatggccaaactgaagctgagatccaagctgaccatggagaag
gtgtacctggctttggagacggtgggtctgatggctgagaaggccaagctggagatcgat
tgtagagacggcgtctctgaactgaagaacactgtgcaaaaatgtagccgtctggagcag
aggaaggtgcagctgacggaacaatgcaaaggcctgttgaagagagcaatggcaatttgc
aagatgaaacctgatgaatcattacccaaagatcttcataatgcgttcagcaagctgcct
gacacactagacgagatcgacgccatgctgaatgaggagcggtccagagctgagtgcttc
actagcctcagtgaaaatgttgttgatgagtacaacaagagagagcaggagatcaaacac
ctggagaaagagctggaagacgagagcaacgctctgaacgctttccgacagaacatatca
gaggctaaggaacgctggctgaacccgctgaagcagctggttgaacagattaatgacaag
ttcagtgatttctttcgctccatgcagtgtgcaggagaggttgatctgcactcagagaac
gaggaggagtatgagaagtatgggatccgaattcgggtgaagttccacagcagcactcag
ctccacgagctgacggcctaccatcagagtggaggagagcgcagcgtctccacaatgctc
tacctcatggccctgcagaagctcaatcgctgccccttcagagtggtggacgagatcaac
cagggaatggatcctgtaaatgagcgaagagtctttgacatcgtggtccgcacggcctgc
aaagagacaacctcccagtacttcttcattacacccaaactgctgcagaatcttcagtac
gctgatgagatgacggtcctctgtgtccataatggcagccacatgctctcctccgaccaa
tgggacgagaaggctttcgtcagacgacgtctcaaaataaaagccagagaatga
DBGET
integrated database retrieval system
