Pseudoliparis swirei (Mariana hadal snailfish): 130199530
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Entry
130199530 CDS
T09868
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03250
Viral life cycle - HIV-1
pswi04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130199530 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
130199530 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130199530 (samhd1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130199530 (samhd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
HD_assoc_2
PDEase_I
Motif
Other DBs
NCBI-GeneID:
130199530
NCBI-ProteinID:
XP_056279075
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Position
9:complement(28679404..28697485)
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AA seq
635 aa
AA seq
DB search
MDGRKRPLAEVLTPDDGFKTPEKRAPQPGLLEPDHTRWGVEQTGRYLRAEGLGQWEDAFR
EQKITGVGLQYLKDADLEKMGLQLLGDRLRVLHSLRKLWLREAEPNKVFNDPVHGHVELP
PLLLFFIDTPQFQRLRRIKQLGAVYFVFPGASHNRFEHCIGVAHLAGLLVQALNQRQPDL
LISRRDALCVQIAGLCHDLAPPPPQVTGPSPTCSTTCSSPKRDPESPGSQHEKASLDMFD
YLVADNQLQPLMERHGLVLPDDLDFIKEQIGGPEAPARGHKWPFKGRPEDKSFLYEIVAN
KRNGIDVDKWDYFARDCHHLGIQNNFDYRRFLKFARVCEVDGQKRICTRDKEVSNLYDMF
HMRNCLHRRAYQHKVSNIIETMITEAFLKADEHIKFEGSGGKMFTLSTAIDDMEAYTKLT
DNVFELILNSSDPALKDSREILRNVVCRRLYKCLGQTQADKPRSATREDILSWEAALARS
VLQSGAQDVRLQPEDFLVSVIDMDYGMKDKNPVNHVHFYCKDDPDKAIRIRKNQVSKLLP
EQFAEQLIRVYCKKTDERSLEAAKKHFVQWCMDENFSKPQDGDVIAPELTPLKASWAVKD
EEEDEEDEEEEGEEGGRDVNHGNGPKKARTQLFKR
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggacggaagaaaacgaccgttggcggaggttctgacccccgacgacggcttcaagacg
ccggagaaaagagcgccgcagcccgggctgctggagcccgaccacacgcgatggggagtg
gagcagacgggccggtacctgcgggcagaagggctcgggcagtgggaggacgcgttcaga
gagcaaaagatcaccggcgtcgggctgcagtatctcaaggacgctgatctggagaagatg
ggcttgcagctcctgggggaccgtcttcgggttctgcacagcctcaggaagctgtggctg
agggaggcggagcctaataaggtgttcaacgacccagtccacggccacgtggagctgccc
ccgctgctcctcttcttcatcgacacgccgcagttccagaggctgcgccgcatcaagcag
ctgggggcggtctacttcgtgttcccaggggcctcccacaaccgcttcgagcactgcatc
ggggtggcccacctggcagggctcctggtccaggctctgaaccagcggcagccggacctc
ctcatctcccgccgagacgcactgtgtgtgcagatcgccgggctctgccacgacctggcc
cctccccccccgcaggtcacgggcccttctcccacatgttcgacaacatgttcatcccca
aagcgagacccggaatcacctggaagtcagcacgagaaagcgtctctggacatgttcgac
tacctggtggccgacaaccagctgcagccgctgatggagcggcacggcctggttctgccc
gacgacctggacttcatcaaggagcagatcggaggcccggaggccccggctcggggccac
aagtggccgttcaaaggccgtccagaagacaagtccttcctctacgagatcgtggccaac
aaaagaaacggcatcgacgtggacaagtgggactactttgccagggactgccaccacctg
ggcatccagaacaacttcgactatcgccgcttcctgaagtttgcccgagtgtgtgaggtg
gacggccagaagcgcatctgcaccagagacaaggaggtgagcaatctgtacgacatgttc
cacatgaggaactgtctgcacaggagagcctaccagcacaaagtgagcaacatcatcgag
accatgatcacggaggcctttttaaaagcggacgagcacatcaagtttgaaggctcgggg
gggaagatgttcacgctctccacagccatagatgacatggaggcctacaccaagctcaca
gataacgtctttgaactcatcctcaactcctccgacccggcactgaaggactcgagggag
attctgcgcaacgtcgtgtgtcgacgcctctacaagtgtctcggccaaacccaggcggac
aaacccaggagcgccacccgggaggacattctgagctgggaagccgctctggctcggtcc
gtcctgcagagcggcgcccaggacgtccgtctgcagccggaggacttcttagtcagcgtc
atcgacatggactacggcatgaaggacaagaaccccgtcaaccacgtgcacttctactgc
aaagacgacccggacaaggccatccggatccgcaagaaccaggtgtctaagcttctcccg
gagcagtttgcggagcagctgatccgagtttactgcaagaagacggatgagcgcagcctg
gaggcggccaagaagcactttgtgcagtggtgcatggacgagaacttctccaagcctcag
gacggagacgtcatagcgccggagctgactcctctgaaagccagctgggcggtcaaggac
gaggaggaggacgaggaggacgaggaggaggagggggaggagggcgggagggacgtgaac
cacggaaacgggccgaagaaagccagaactcagcttttcaaacgctga
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