Pseudoliparis swirei (Mariana hadal snailfish): 130201555
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Entry
130201555 CDS
T09868
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130201555 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130201555 (si:ch211-266g18.9)
Membrane trafficking [BR:
pswi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130201555 (si:ch211-266g18.9)
BRITE hierarchy
Motif
Pfam:
Vps39_1
Vps39_2
CNH
Clathrin
PHD
Motif
Other DBs
NCBI-GeneID:
130201555
NCBI-ProteinID:
XP_056282593
LinkDB
All DBs
Position
11:complement(24390342..24401802)
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AA seq
837 aa
AA seq
DB search
MAFKAFTHTHVYEKQSGSKEKDKSGIQCIERHDRNVYIGTQDATVLHLVLPAGPDGDPSP
GQSKIRECRLRKLGSSDQVAQLRVVPLFNHLLVLWDRSVTALNMFSLEPVAALKKIQHVH
LFEVCDSSAARVEMVTSSSRRKLIRIHVVGVDSWDVVKEVSLLQEPVALAVDGACVCIGT
SDRYLLCDIRTGSRDDLFLHNHGRQRVIVTSMGRGEFLLNGPESLGMFVMKTGICQRPPL
QWPQEVLAAGVCFPYILTLQPRVLSVYSLLDQQCKQTVNLRGAKGLLCTSDGVLVFTERD
VFSLRPVPLREQTQALVGLERFEEALLLLDGVRGRRPLDSYEELQKAVSCLAGFVHFYQE
AFSDASVLFITGELDPRELICLYPGIQACLGEDFQSQLEPLNKSRDLQVLCQEDRHTFHH
YLAFLGEFLRAVRGTERGLQCSKEVDCALLRLYVELEDTENLQQLVTCTNVCSLDHCLPV
LEQHSRYFALGSLYQSHGNHIDAIKTWVNIADGLHQDRSCSDVYGHIVWTLSRLQDRDAV
WTFADWTLQRNQEIGVQIFNKRAPDDRLETQDVLALVERYPSALLLYLEFLIHDLNSEEE
GHHNRLALAYVTQSLREEEESGLRKTRGKLQQLLWDSKFYDVSTVYERVESAAFLREKGI
LLGRTGGHGEALQLLVHQEGDLRAAEAYCSRAGRDAQARQTLLLTLLQIYLGSEDHGGAA
VDLLNRNPRVLAAERVVQLLPDSWSVQLVSQFLVGSLRETFHRRRMAMLQKAIGQVELLR
HKVIWMQASKTKFKLDKGQQCHVCQRDLAEPPFACDLSGDLMHTSCPGPPPREDTDP
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagcatttacacacacacacgtctacgaaaagcaatccggctcaaaagaa
aaggacaaatccggcatccagtgcattgagcgccatgaccggaatgtgtatatcgggacc
caagatgcaaccgtcctgcatctcgtcctccccgctggcccagatggagacccgagtccc
ggccagagcaagatcagagagtgtcggctgagaaaactcggctcaagcgaccaagtcgcc
caactgagggtcgtcccacttttcaaccatctgctggtcctgtgggaccggagcgttact
gccctcaacatgttctccttggagccggttgccgcgctcaagaagatccagcatgtgcat
ttgtttgaggtgtgcgactcatcggcagcgcgtgtggagatggtgacttcctccagccgc
aggaagctgatccggatccacgtggtgggagtggacagctgggacgttgtgaaggaagtc
tctctgctgcaggagcctgtggccctggcggtggacggggcctgtgtgtgcatcggtacc
agcgacaggtatctcctctgtgatatccggactgggagccgtgacgatctttttctgcac
aatcacggcagacagcgcgttatcgtaacctcgatgggacgaggggagtttctgctgaac
gggcctgaatcgttgggcatgtttgtgatgaagacggggatatgccagcgccctcctctg
cagtggcctcaggaggtgctggcagccggagtctgcttcccttacatcctaaccctgcag
ccccgagtgctgtcggtttacagcctgctggatcagcaatgcaaacagactgtgaatctc
aggggagcgaagggtctgctctgcacatcagacggcgtgctagtgttcacagagagagac
gtgttcagccttcgcccggtgccgctcagagagcagacccaggcgcttgtcgggctggag
cggtttgaggaggccttgttgctgctggatggagttcgaggccgtcgtccccttgactca
tacgaggagctgcagaaggccgtctcttgtctggctggatttgttcatttttaccaggag
gctttttccgatgccagcgtcctattcattacaggtgagctggaccccagagaactcatc
tgcctctaccctggcatccaggcgtgtctcggcgaggactttcaatcccagcttgagccg
ctgaacaagagcagggatctgcaggtgctctgccaagaggacaggcacacattccatcat
tacctcgccttcctgggagagtttctcagagcagtcagggggacggagcgaggcctgcag
tgcagtaaggaggtggactgcgccctcctgaggctgtacgtagaactggaagacacggaa
aacctgcagcagctcgtgacgtgcaccaatgtgtgcagcctggaccactgtctccctgtg
ttggagcaacacagcagatattttgcattaggttccctctaccaaagccatggaaatcac
attgatgcaattaagacctgggtgaacattgcagacggcctccaccaagatcggtcctgc
tcagatgtgtatggacacatcgtgtggactctcagtcgactgcaggacagagatgctgtg
tggacatttgcagactggacccttcagaggaaccaggagataggggtgcagattttcaac
aaacgtgcaccagacgatcgattggagacgcaggacgtcctcgccctcgtggagcggtac
ccgtcggcgttgcttctgtaccttgagttcttaatccatgatttgaacagtgaggaggag
gggcatcacaaccgtctggccctggcatatgttacccagtcactgcgagaggaagaggaa
tccggtttgaggaagaccagagggaagttgcagcagctgctatgggactccaaattctac
gatgtctccactgtatatgagagagtcgagtcagcggcctttctccgagagaaaggcatt
ctcctcgggaggaccggtggacacggggaggcgctgcagctgctggttcaccaggaggga
gacctccgggctgcagaggcctactgcagccgggccggccgggacgcacaggcccggcag
accctgctgctcaccctgctccaaatctacctcggctccgaggatcacggcggcgccgcc
gtggatctgctcaacaggaacccgcgggtcctcgcagcagagcgggtcgtccagctgctg
cctgattcctggtctgttcaactggtctcccagttcttagtgggatcccttcgagaaaca
ttccaccggaggcggatggcgatgctgcagaaagcgatcggccaggtcgagcttctgcgg
cacaaggtcatttggatgcaggcctcaaaaacaaagttcaaactggataaggggcagcag
tgtcatgtttgtcagagagacctggcagagccaccgtttgcctgtgacctctctggtgac
ctgatgcacacgagctgtcctggtcccccccctcgtgaagacaccgacccataa
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