Psychrobacillus sp. INOP01: KD050_08210
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Entry
KD050_08210 CDS
T09653
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KD050_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyb03019
]
KD050_08210
03009 Ribosome biogenesis [BR:
psyb03009
]
KD050_08210
Enzymes [BR:
psyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KD050_08210
Messenger RNA biogenesis [BR:
psyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KD050_08210
Ribosome biogenesis [BR:
psyb03009
]
Prokaryotic type
rRNA helicases
KD050_08210
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_19
AAA_22
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QUG43190
LinkDB
All DBs
Position
complement(1631174..1632727)
Genome browser
AA seq
517 aa
AA seq
DB search
MTNFSELNISASTLKSVQRMGFEEATPIQEGTITHAMGGRDVIGQAQTGTGKTAAFGIPM
IEKIDTKNPNIQALIIAPTRELAIQVSEELYKLGYDKKVRLLSVYGGQEISRQIRALKNK
PQVIVGTPGRILDHINRRTLKLDQVQTLILDEADEMLNMGFIEDINTILESVPADRQTLL
FSATMPGPIRKIADRFMKDPVEVKIKSKEMTVENIEQFYVKATEREKFDVLSRILNVHQP
ELAIIFGRTKRRVDELAHALSIRGYLAEGIHGDLSQAKRMSVLKQFKSNKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGIATTFVTPREMGYLRIVENTTK
KRMEALIPPSSDEALVGLKRVAVESLSEIVNKNDLGDYRPLAQEMLEKYEAVDVIAAALK
SMTKEPDDTPISLSEERPLPARRERSGGGGSRSGGGYKGNRSGGGGRSSSGSRGGSSDRG
PRSGGGSRPSSSGRRSSGPRDGSTQRSTRTRSSRSEN
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgcttctacattaaaatccgtacaacgtatg
gggtttgaagaagcaacaccaatccaagaaggtactattacacatgctatgggtggacgc
gacgttatcggtcaagcacagactggtacaggtaaaactgctgcatttggtatccctatg
attgaaaaaattgatactaaaaacccgaacatccaagcattaatcatcgctccaacacgt
gaacttgcaatccaagtttcggaagagctttacaaattagggtatgacaaaaaggttcgt
ctattatcagtatacggtgggcaagaaattagccgtcaaatccgtgcacttaaaaacaaa
ccacaagttatcgtagggacacctggtcgtattcttgaccatatcaaccgtcgtacgtta
aaacttgatcaagttcaaacacttatcttagacgaagcagatgaaatgcttaacatggga
ttcattgaagatatcaacacaattttggaaagcgttcctgctgatcgccaaacattatta
ttctctgctacaatgccaggaccgattcgtaaaattgctgatcgcttcatgaaagatcca
gttgaagtaaagattaagtctaaagaaatgactgttgaaaacattgaacagttctacgta
aaagctactgaacgtgaaaaatttgatgttctttcaagaatattaaatgtacaccaacca
gaacttgcgattatctttggtcgtacaaaacgtagagttgacgaattagcacatgctcta
agcattcgtggttaccttgcagaaggaattcatggtgatttaagccaagcgaaacgtatg
tctgtactaaaacaattcaaatcaaataaaattgatattcttgttgcgacggatgtagct
gcacgtggattagatatctctggcgtaacgcatgtatataactttgatattccacaagat
cctgaaagctatgttcaccgtatcggtcgtacaggtcgtgcgggtaaaagtggtatcgct
actacattcgtaacacctagagaaatgggatacttacgtatcgttgagaatacaacgaaa
aaacgtatggaagctttaatccctccaagctcagatgaagctctagttggacttaaacgt
gtagcagtagaatctttatctgaaattgtaaacaaaaatgatttaggcgattaccgtcca
ttagcacaagaaatgcttgagaaatatgaagcagtggatgtaattgctgcagctttaaaa
tcaatgacgaaagaaccggatgatactccgatttctctttctgaagaacgtccactacct
gctcgtagagaacgtagtggtggaggcggttctcgttccggcggtggttacaaaggtaac
cgtagcggcggaggcggacgtagttcatcaggtagtcgtggtggaagcagcgatcgcgga
cctcgttcaggtggcggttcacgcccaagttcaagcggacgtcgtagcagtggtccccgt
gatggttctacacaacgtagcacaagaactcgttcatcacgtagcgaaaactaa
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